Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1029 ATGAACACTTTCAACCAACCAAGTAGCGGTGTCACCACGCGCCACCACAACTTCAATTCCCACCGTCAATCACCATCACAACAACCACCACCACCACCACCTTCTTACGGTGTTCAAACATCTCATCCCCCACACAACTCGTTCCACCACTGGAATCCTGGTGTCAGTAACCCACCGGACAAGACCTCCACCCTCCGCCGTCCAAATTTCGACATCACCCTCCGCACCGGCCGCCGCTCATTCCGGCGAGATGAATTCTTGGCGCTAATCTCCGAATGCGACTTGAAGCCGGAGTTCAAGTCCTTTCCCGCTTCCGACCGCATCGCCGGCGTGATCGGTTTCCGGCAGTGGTGCGACGCCTTAGACGCCGTCGTTTGGTTCTGGAAGACTCGCCTGAATGAAATTCACGATCTCATGCCGGAACTCACTTCGTATGTTATAGTACCTTCGGATATGAACGAACTCGAACGTAGATTGAAAGCCCTATTTACTTACCACGTGAAGTGTTTGATGAATGAAGGGAAAGAGGTTAAACGATTGAACGTTGAAATCGATCGATTATCGAAAGAGATTGATAGTTTTTGTAAGGTACTGAGTAAACCGTTGCCAATTCCGGTTTATAATCAGAGAGTGGAGAAGAAGAAAGGGCTTGTAGCTGAGAAGAACCTAATTGAGAAGAGAATAAGAGAATTTAAGAATGCAATGGAGTGTTTGGTTAAGAAATTTGAAGAAGAGGAAGAAGATGATGATGAAGAAGAAGGGAAGAATAATAAGGTGTTGGAGGATGAGGAAAGTGTTGTTTCTGTGTTTAAGTTTGAAGGAAGATTGGATTGGAAAAAGGTTCATTGCATGATCATGAGAGAAAGGAAGAGACTTGAACAAGGGTTACCAATATATGCTTATAGGAGTGATATTATTCAGCAAGTTCATTCTCATCAGGTAACAGTGTTAATTGGAGAGACTGGCTCTGGAAAGAGTACACAGTTGGTACAGTTCTTAGCTGATTCGGGTGTTGGTGCTAATGAGTCCATTGTATGCACCCAACCTCGTAAAATTGCTTCCAAATCGGTGTCTGAAAGGGTACAGGAAGAAAGCAGTGGATGTTATGGAGACAACACTATCAAGAATTATTCTACCTTTTCATCATCAAAGTGTTTTGATTCCAGAATTACATTCATGACAGACAACTGTTTATTGCAGCACTATATGGATGACAAGAATCTGTTTGGGGTCTCGTGCATCATAATTGATGAGGCTCATGAAAGGAGCTTAAATACTGATATCTTGTTGGCAGTGATCAAGAATTTACTCAGTAGGAGGGTTGACATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAGAGCAGCTATCTGATTATTTCTATGGATGTGGAATTCTTCATGTGCTTGGGAGAAACTTTCCAGTGGATGTGAAATATGTTCCTTCTGACAACATGGAACATTCTGGTTCTGCTGTTATTATTGCCTTGTATGTGTCTGATGTTGTCAGAATGGCAACTGAGATTCACAAAACAGAGAAAGAGGGATCTATCCTTGCCTTTCTGACCTCACAGGTAGAAGTAGAGTGGGCCTGTGATAAGTTTAGAGATACCTCTGCAGTTGCTTTGCCCTTACATGGAAAACTTTCGTCTGAAGAGCAATTTCATGTTTTCCAGAATTACTCTGGAAAAAGAAAAGTGATATTTGCAACAAATCTTGCAGAGACATCACTTACGATTCCTGGTGTTAAGTATGTGATAGATTCTGGGTTTGTTAAAGACTGCCGGTTTGATCCTAGCAGTGGGATGAGTGTACTTAAGGTTTGCCGGATCAGCCAGAGTTCTGCTCTTCAACGGGCTGGTCGTGCTGGGCGAACTGAGCCTGGTAGGTGCTATAGACTGTACTCAGAAGATGATTTTCAGTCTATGGAACCAACCCAAGAACCTGAGATTCGGCGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAATGTGCAGGAATTTGATTTTGTGGATGCTCCAAGTTCTAGATCTATTGAGATGGCGATCAAGAATCTAATTCAACTAGGAGTCATTACACTGAACAAAAATGTTTATGGATTAACACATGAAGGCAGATGCTTGGTAAGATTGGGGGTTGAACCTAGGCTTGGTAAACTCATTCTTGGCTGTTGCCGTTATGGTATGGGTAGAGAAGGCGTTGTCCTTGCTGCTTTGATGGCCAATGCCAGCACAATATTTTGCAGAGTTGGTAATGAAGATGATAAGCAAAGATCCGATTGTCATAAAGTTCAATTTTGCCACTGTGATGGTGACCTCTTTACTCTACTCTCTGTGTACAAGGAATGGGAAGCTTTGCCTCGAGACAGTAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCAATGAGGAGATGCCAAGACATTGTTGTGGAGTTAGAATCTTGTCTTGAACGTGAACTATGCATTGTTACTCCAAATTACTGGCATTGGAACCCTTATAAGCCCTCTGATTATGATGAGTATCTGAAGAAGGTTATACTAGCTTCACTTGCCGAGAATGTAGCCATGTACTCTGGATGTGACCAACTTGGTTATGAAGTGGCACAAACTGGACAACTTGTTCAACTACATCCATCTTGTTCATTACATGTATATGCTCAGAAACCTAGTTGGGTGGTTTTTGGTGAACTTCTTTCTGTTTCTAATCAATATCTGGCATGTGTAACTGCTTTTGACTTTGACTCATTGTACAACCTCTACCCTCCTCCCCCTTTTGATGTATCCAAGATGGAAAAGCGGAAGTTACAGATGAAGAGGTTGACTGGTTTTGGATCTATTCTTCTCAAGCGATTTTGTGGGAAAGGCAACAGTAGTGTGCTTCGTCTGGTATCTCGGATAAGGAAAGCTTGTATGGATGACCGTATTTTTATTGAAGTCAATGTTGGCCAGAATTACATTCAGTTATATGCCACTTCACATGATATGGAAACTGCCCTTGGATTAGTTACTGATGTTTTAGAATATGAGAAAAAGTTGCTTAATACTGAATGTATGGAAAAATGTTTGTATCATGGTTTCTCTCCTTCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAGTGTTTCTTGTCTATTGATGTCTGTCATCCAAACATAACTGCAATTGATGACAAGCAGCTCTTGATGTTTTTTGAGAACACCTCTGGTGATATCTGTTCAGTGCAGAAGTTTACATGCAAGGCGGAGTATTCTGAAGAGAGAGAAAAGTGGGTCAAGGTAACATTTCTCTCCCCTGATGCTGCCGAAAGAGCTGCTGATCTAGATGGAGTGGAGTTTTGTGGCTACCCCTTGAAAGTTGTCCCATCACAAATTGCTGTGGGAGGAGATAAAACATTTTCATTTCCTGCTGTTAAAGCAAAAATTAGTTGGCTTCGTAGGCCTAGCAAGGGGTTTGGCATTGTTAAATGTGACATAAATGATGTCAATTTCATCTTGGGAGATTTCTATAACCTTGCGATTGGAGGGAGGTATGTTCGATGTGAAGCTAGCACAAAGAATGCAGACTGTATTACGATACGTGGGATTGACAAAGATCTCTCTGAAAGTGAAATTTTAGATGAACTAAAAGCTGCTACAAGTAGAAGGATTCTGGATTTTTTCTTAGTCAGAGGAGATGGCATTCTAAATCCACCATGCAGTGTCTTTGAAGAGGCACTTCTAAAAGAAATTTCCCCCTTTATGCCTAACATAAACCCACACATTAGTTCTTGCAGAGTTCAGGTGTTCCCACCGCAGCCAAGGGAGACATCCACGAAAGCTTTAATCATTTTCGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGGAAAGTATTGCCTGGATGTTTTTCATGGCAGAAAATAAAGTGTGAGAGGATGTTCCATAGCTCCTTGATATTTCCTGAACCGTTGTATAGCGTAGTTAAGGATGAACTGGAGAAAGTACTTGCAAGGTTAAAAAATGTGAATGGTGTTGAGTTGATCCTAGACAGATTTACTAATGGTTCCCGCCGAGTGAGAATAACAGCCAATGCCACAAAGACAGTTGCAGAAGTTAGGAGACAGCTGGAAGAACTATCAAGAGGGAAAACCATTGAACATGAAAACCTCACCCCTATAGTTGTACAGCACATGTTGACCAGAGATGGCTTTAATCTTAAAAGCTCATTACAGGAAGAGACCGGTACTCATATTTTTCTTGACAAGCACACCCTGAGTATACGAGTGTTCGGTCCCCCGGACAAGCTTGCTTTTGCTCAGCAGAAGCTGGTTCAATTGCTACTCTCTCTCCATGAAAGGAAGCAGTTAGAAATCCATCTTTTAGGGAGAGATCTACCTCCTGACCTAATGAAGCAAGTGGTTAAGAATTTTGGTCCAGATCTCCAAGGGCTAAAAGAGAAGGTACCTGGGGCAGATCTTATACTCGACACACGCCGCCAGATTATCTGTCTTCGTGGCAACAAGGAGCTGAAACCAAGAGTGCAGGAAATAATTTCCGAGACTGCACATTCATGTGACTCTTTGGTTCAGAGAATTCACGATGGGCCTACTTGCCCAATTTGCTTGTGTGAGGTTGAAGATGGAGTGCGGCTTGAGGGCTGTGGTCATTTGTTCTGCCAGTTTTGTCTGGTGGAGCAATGTGAATCTGCTATACGAAACCTAGGCAGCTTCCCGATATGTTGTGCTCACGAGGGCTGTGGACATCCCTTTCTTATTGCAGATTTGAGATCTCTCTTATCCCATGTTAAGTTGGAGGAACTTTTCAAGGCTTCTTTGGGAGCTTTCGTGGCCTCAAGTGGAGGAACCTACAGGTTTTGCCCATCTCCTGACTGCCCCTCGATTTATCGTGTTGCTGATCCCGATACACCTGGTGAGCCATTTGCTTGTGGGGCATGTTACGCAGAGACTTGTACCAGGTGCCACTTAGAGTACCATCCATATGTTTCATGCGAGAAATATCGAGAGTTCAAGAAAGATCCCGACTCATCGCTGAAGGAGTGGTGCAAGGGGAAAGAACATGTTAAGTGTTGCCCGGTGTGTGGGTTTACAATTGAGAAGGTGGATGGGTGCAACCACATAGAATGCAAATGTGGAAAACATGTGTGCTGGGCTTGCTTGGAGTATTTTGAAAGCAGTGATGATTGTTACAACCATTTGAGAAATATACACATGACCATCATATAA 5283 0.428 MNTFNQPSSGVTTRHHNFNSHRQSPSQQPPPPPPSYGVQTSHPPHNSFHHWNPGVSNPPDKTSTLRRPNFDITLRTGRRSFRRDEFLALISECDLKPEFKSFPASDRIAGVIGFRQWCDALDAVVWFWKTRLNEIHDLMPELTSYVIVPSDMNELERRLKALFTYHVKCLMNEGKEVKRLNVEIDRLSKEIDSFCKVLSKPLPIPVYNQRVEKKKGLVAEKNLIEKRIREFKNAMECLVKKFEEEEEDDDEEEGKNNKVLEDEESVVSVFKFEGRLDWKKVHCMIMRERKRLEQGLPIYAYRSDIIQQVHSHQVTVLIGETGSGKSTQLVQFLADSGVGANESIVCTQPRKIASKSVSERVQEESSGCYGDNTIKNYSTFSSSKCFDSRITFMTDNCLLQHYMDDKNLFGVSCIIIDEAHERSLNTDILLAVIKNLLSRRVDMRLIIMSATADAEQLSDYFYGCGILHVLGRNFPVDVKYVPSDNMEHSGSAVIIALYVSDVVRMATEIHKTEKEGSILAFLTSQVEVEWACDKFRDTSAVALPLHGKLSSEEQFHVFQNYSGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDCRFDPSSGMSVLKVCRISQSSALQRAGRAGRTEPGRCYRLYSEDDFQSMEPTQEPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSSRSIEMAIKNLIQLGVITLNKNVYGLTHEGRCLVRLGVEPRLGKLILGCCRYGMGREGVVLAALMANASTIFCRVGNEDDKQRSDCHKVQFCHCDGDLFTLLSVYKEWEALPRDSKNKWCWENSINAKSMRRCQDIVVELESCLERELCIVTPNYWHWNPYKPSDYDEYLKKVILASLAENVAMYSGCDQLGYEVAQTGQLVQLHPSCSLHVYAQKPSWVVFGELLSVSNQYLACVTAFDFDSLYNLYPPPPFDVSKMEKRKLQMKRLTGFGSILLKRFCGKGNSSVLRLVSRIRKACMDDRIFIEVNVGQNYIQLYATSHDMETALGLVTDVLEYEKKLLNTECMEKCLYHGFSPSVALFGSGAEIKHLELEKCFLSIDVCHPNITAIDDKQLLMFFENTSGDICSVQKFTCKAEYSEEREKWVKVTFLSPDAAERAADLDGVEFCGYPLKVVPSQIAVGGDKTFSFPAVKAKISWLRRPSKGFGIVKCDINDVNFILGDFYNLAIGGRYVRCEASTKNADCITIRGIDKDLSESEILDELKAATSRRILDFFLVRGDGILNPPCSVFEEALLKEISPFMPNINPHISSCRVQVFPPQPRETSTKALIIFDGRLHLEAAKALEQIEGKVLPGCFSWQKIKCERMFHSSLIFPEPLYSVVKDELEKVLARLKNVNGVELILDRFTNGSRRVRITANATKTVAEVRRQLEELSRGKTIEHENLTPIVVQHMLTRDGFNLKSSLQEETGTHIFLDKHTLSIRVFGPPDKLAFAQQKLVQLLLSLHERKQLEIHLLGRDLPPDLMKQVVKNFGPDLQGLKEKVPGADLILDTRRQIICLRGNKELKPRVQEIISETAHSCDSLVQRIHDGPTCPICLCEVEDGVRLEGCGHLFCQFCLVEQCESAIRNLGSFPICCAHEGCGHPFLIADLRSLLSHVKLEELFKASLGAFVASSGGTYRFCPSPDCPSIYRVADPDTPGEPFACGACYAETCTRCHLEYHPYVSCEKYREFKKDPDSSLKEWCKGKEHVKCCPVCGFTIEKVDGCNHIECKCGKHVCWACLEYFESSDDCYNHLRNIHMTII* 1761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1029 1760 Pfam Helicase conserved C-terminal domain 509 626 IPR001650 -
Lan3g1029 1760 Coils Coil 170 190 - -
Lan3g1029 1760 CDD SF2_C_RHA 474 635 - -
Lan3g1029 1760 MobiDBLite consensus disorder prediction 40 69 - -
Lan3g1029 1760 Pfam Helicase associated domain (HA2) 688 782 IPR007502 GO:0004386
Lan3g1029 1760 ProSiteProfiles TRIAD supradomain profile. 1547 1755 IPR044066 -
Lan3g1029 1760 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1579 1676 - -
Lan3g1029 1760 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 108 1506 - -
Lan3g1029 1760 SMART helicmild6 529 627 IPR001650 -
Lan3g1029 1760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1548 1627 IPR013083 -
Lan3g1029 1760 ProSitePatterns Zinc finger RING-type signature. 1567 1576 IPR017907 -
Lan3g1029 1760 SMART ultradead3 294 479 IPR014001 -
Lan3g1029 1760 MobiDBLite consensus disorder prediction 25 39 - -
Lan3g1029 1760 Coils Coil 221 248 - -
Lan3g1029 1760 MobiDBLite consensus disorder prediction 1 69 - -
Lan3g1029 1760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 667 IPR001650 -
Lan3g1029 1760 SUPERFAMILY RING/U-box 1549 1609 - -
Lan3g1029 1760 SMART ibrneu5 1618 1683 IPR002867 -
Lan3g1029 1760 SMART ibrneu5 1684 1748 IPR002867 -
Lan3g1029 1760 SMART ha2_5 687 783 IPR007502 GO:0004386
Lan3g1029 1760 ProSitePatterns Zinc finger C2H2 type domain signature. 1735 1756 IPR013087 -
Lan3g1029 1760 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 412 421 IPR002464 -
Lan3g1029 1760 Gene3D - 649 692 IPR042035 -
Lan3g1029 1760 Gene3D - 473 646 IPR027417 -
Lan3g1029 1760 Gene3D - 1662 1757 - -
Lan3g1029 1760 MobiDBLite consensus disorder prediction 1 24 - -
Lan3g1029 1760 ProSiteProfiles Zinc finger RING-type profile. 1551 1593 IPR001841 -
Lan3g1029 1760 PANTHER ATP-DEPENDENT RNA HELICASE 1579 1676 - -
Lan3g1029 1760 PANTHER ATP-DEPENDENT RNA HELICASE 108 1506 - -
Lan3g1029 1760 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 851 928 IPR011709 -
Lan3g1029 1760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 306 470 IPR014001 -
Lan3g1029 1760 CDD DEXHc_RHA-like 312 469 - -
Lan3g1029 1760 Gene3D - 239 472 IPR027417 -
Lan3g1029 1760 SUPERFAMILY RING/U-box 1705 1751 - -
Lan3g1029 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 805 IPR027417 -
Lan3g1029 1760 Pfam IBR domain, a half RING-finger domain 1625 1683 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1029 Lan-Chr3 22608354 22615073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1029 1566 1742 C3H Transcription Factor Family AT2G31770 26.923 1.02e-12 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1029 K12818 - gmx:100810008 2468.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0054 15 337794 344895 Lan3g1029 3 22608354 22615073 LSH