Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1027 ATGTATACTAAGGAGTTTCAATCAATGTTAGATGGAATTGATGAGGAAGGTAGTATTTTAGAGAAGAAACGTAGACTTGGTGTGAATCAAGTTAAGACTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACATGAAACAAAGGTGAAGCTTGCACAAGACCTTGGTTTGCAACCTAAACAAGTTGCTATTTGGTTCCAAAACCGAAGAGCTAGATGGAAAACTAAGAATATGGAGAGAGATTATGGTGTCCTTAAAGCTAATTATGATGCCCTTAAGCTTAACCATGATGCCCTTAAACAAGACAATGAAGCTTTATTCAAGAAGATTAAAGAATTGAAATCAAAGTTGCAAGAAGAAAACATTGCAAATGATATTTCAGTGAAGAAAGAAACAATGATGATTGAGCAATGTAATAATAATCCTATATCAGATTCCAAGAATCACTTAAATTATGATTGCTTCAACAATAATAGAAATAGGGTAGTAGAAGAAGAATCACTTTTTCCATCATCAGATTTCAAAGATGGTGCTTCTGATAGTGACTCTAGTGCAATCTTGAATGAAGATAATAGTTCAAAAGCTACAATTTCTTCATGTGGGGTACTCCAAAATCACCATTTTTTGATGTCTAATGAATCATCATCTTCACCTTCTTCAATGAATTGCTTTGAGTTTGGGAAATCTTATCAGGATACACAGTATGTGAAGATGGAAGAAAACAACTTTTTCAGTGCAGAAGAAGCATGCAATTTCTTCTCAGATGAACAAGCACCAACACTTCATTGGTATTCATAA 801 0.3358 MYTKEFQSMLDGIDEEGSILEKKRRLGVNQVKTLEKNFEVENKLEHETKVKLAQDLGLQPKQVAIWFQNRRARWKTKNMERDYGVLKANYDALKLNHDALKQDNEALFKKIKELKSKLQEENIANDISVKKETMMIEQCNNNPISDSKNHLNYDCFNNNRNRVVEEESLFPSSDFKDGASDSDSSAILNEDNSSKATISSCGVLQNHHFLMSNESSSSPSSMNCFEFGKSYQDTQYVKMEENNFFSAEEACNFFSDEQAPTLHWYS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1027 266 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Lan3g1027 266 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Lan3g1027 266 SMART HOX_1 20 81 IPR001356 GO:0003677
Lan3g1027 266 Pfam Homeobox associated leucine zipper 77 119 IPR003106 GO:0006355|GO:0043565
Lan3g1027 266 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Lan3g1027 266 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Lan3g1027 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 261 - -
Lan3g1027 266 SUPERFAMILY Homeodomain-like 18 78 IPR009057 -
Lan3g1027 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 261 IPR045224 GO:0003700
Lan3g1027 266 CDD homeodomain 22 78 IPR001356 GO:0003677
Lan3g1027 266 Coils Coil 90 124 - -
Lan3g1027 266 Pfam Homeodomain 23 75 IPR001356 GO:0003677
Lan3g1027 266 Gene3D - 21 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1027 Lan-Chr3 22585475 22588272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1027 4 266 Homeobox Transcription Factor Family AT2G22430 43.243 5.07e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan3g1027 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1027 K09338 - rcu:8284910 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0607 12 12908720 12910908 Lan3g1027 3 22585475 22588272 PCT