Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1023 ATGCAGAGTCCCAATTCCTTAATACCACTTTTTCAAACCCACGACCCGGATCCGAATCCGAATCCATCTAATCGGGTCCCACTTCATAACCTCTTCATCATCAAAACCCGATTGGATTCTCTACATCACTTCCTATCCCACTCCATCAATACCCACACCCTTCTAACCAATCACCAATTGACATCTGTCTCAAACGACGTCGTTTCTTCCATTCACCAATTAATAGTCAACGGTGCCGCTCTAATCTCCGTCGATGCTAAATTACCGGATCCACCGGAAGCGCCGGTTACTAAACCGATCTTAGATAAGGGTAAGAATTTGAAAATCGAGGTTCATGATGAAAACGGTGTGGAAGATTTCGACGGCGGCGGTGGCGGTGGCGATTGCGAAATCGTGGAGCTCGACGCCGTGGAACTGCTCGCGGAACACACTCACTTCTGCGAGATTTGCGGGAAGGGTTTCAGGCGAGATGCGAATTTGAGGATGCATATGAGAGCTCACGGGAACAAGTTCAAGACGCCGGAAGCGTTGGCGAAGCCGTTACCGACGGAGGATGAAGGTTCAGTGTCTTCCACGCGCCGCCGTGGTGTGGCGACTCAGTTCTCGTGTCCTTTTGAAGGTTGCAATAGGAACAAGGGGCATAAGAAGTTCAAGGCGTTGAAATCGATTGTTTGCGTGAAGAATCATTTCAAACGGAGCCATTGTCCGAAGATGTATTCGTGTAACCGTTGTCATAAGAAGAATTTCTCGGTGCTTTCGGATTTGAGGAGCCACATGAAGCAATGTGGTGAATGTTCTAAGTGGAAATGTTCGTGTGGGACCACTTTTTCGAGGAAGGATAAGTTGTTCGGACACATTGCCCTATTTGAGGGTCACATGCCTGCTCTTGCTGTGGATGATGTTGAGAAAGGGAAGAAGTCGGCGATTGCGGTCGCGGTTGAGGTAGATGAAGATCCAATGTTGATAAATGATTTCGAATTCACTGAATTTGGTAATTGTTTTGTTGATGATTTTGATGGTGATAGGTTCTTTGATGATTTGGATAAATTGGATAGTTTTACCTCTTTGGATTTGCCATCCATTTAA 1086 0.4641 MQSPNSLIPLFQTHDPDPNPNPSNRVPLHNLFIIKTRLDSLHHFLSHSINTHTLLTNHQLTSVSNDVVSSIHQLIVNGAALISVDAKLPDPPEAPVTKPILDKGKNLKIEVHDENGVEDFDGGGGGGDCEIVELDAVELLAEHTHFCEICGKGFRRDANLRMHMRAHGNKFKTPEALAKPLPTEDEGSVSSTRRRGVATQFSCPFEGCNRNKGHKKFKALKSIVCVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLRSHMKQCGECSKWKCSCGTTFSRKDKLFGHIALFEGHMPALAVDDVEKGKKSAIAVAVEVDEDPMLINDFEFTEFGNCFVDDFDGDRFFDDLDKLDSFTSLDLPSI* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1023 361 MobiDBLite consensus disorder prediction 1 24 - -
Lan3g1023 361 SUPERFAMILY beta-beta-alpha zinc fingers 142 168 IPR036236 -
Lan3g1023 361 SMART c2h2final6 145 167 IPR013087 -
Lan3g1023 361 SMART c2h2final6 201 234 IPR013087 -
Lan3g1023 361 SMART c2h2final6 239 260 IPR013087 -
Lan3g1023 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Lan3g1023 361 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 356 IPR044300 GO:0010044|GO:0010447
Lan3g1023 361 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Lan3g1023 361 Gene3D Classic Zinc Finger 140 170 - -
Lan3g1023 361 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 23 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1023 Lan-Chr3 22547902 22549562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1023 127 302 C2H2 Transcription Factor Family AT1G34370 60.227 4.48e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g1023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1023 - - cam:101491258 375.941