Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1022 ATGTCAATATCACGCCCGTTCGAGCTGGTAAGGGATTTAAATGACTCAAAACACCTGTGGAAGATAGCTGTTAGAATTACAGATATTTGGTATGTTCAGCTTCCACCTAAACCTGGACATCTGGAAATGATACTGATGGACTGCAAGGGAGACAAGATCCAAGTTTCTGTGAAAAAGGAAGAATTCAATCAATGGAAAGATCATTTGGTTGAAAACCATACATATGTCATGCATAATTTCAATGTGTTCCACAATGATCTTCAATTTAAGGCATGTAATCATGCCTATAGATTGCAATTTACAGCTGGTACAACTCTAAGAGAAAAAGAGGTTGCCGATATTCCTCAATTTCAATATGTTTTTAAAAAGTTTGCTGAAATACTTGCTGGTGACTTTGATGCTGATTTGTTAGTAGACATTATTGGTGTTGTTGATAAAATGGTTTTCTCTGAGACACAAACTTCTTTAAAGAAGGTTATTTTCAATCTCAAAGATTCTAGCGGTGAAGTTATGACATGCACTCTTTGGGACTCTCATGCCCTGAAGTTTTGTAACTGTTATAACAACATCACAATTGGTGAGCCCATCATTGTTTTGCTGACACATGCCAGAGTTAAGGAAGGACAAGGCAAGTATCCACCGACAGTTAGCAATTCATGGTGTGGATCGAAAATATTAATTGATGATGAAATTCCTGATTACCAAAAATACAAGGATAGTTTTGCAACTTTAACTCTGTCATGTGATTCCTTGAGCCAAGGGAGCAGCCAACTGTCTCAATACTCTAACTTATCTGATGATGACCGATTCATGTACAAGGCTGAGGTGAAGAGTCTTTATGAAATTGCAGCCTTAACATCAGCTGAGGAAATAACTTGTGTTACTATTGGAACAACTGCAATGTTTATTGTGGGAAAACAAGGGTGGTATTATGATGGGTGTTTAAAGTGCACTAAGAAAATTGATGCTAAGGACGTTCCGTTCACGTGCAAGTGTGGCACATATAACTTGATGCCTACCCCAAGGTACAAGTTGGACATTAAAGTCATTCATGAGAATGGAAGTGGAAGGTTTGTCTTTTGGGATCGTCAATGTGCTGATATCATTGGAGTATCTGCTTTTGAGCTTAGAAATCGGATGGTCGCAGAAGGTGAGGATGATCCAAAGGCATTCCCACTCATGCTTGACATGCTGCTTGCAAGGACAATGGCGTTTAGAGTCAAAGTCCAACCATCTTACCACCAATCCTCTGTGATGAGGCTATCTGAAAGTACGGTCTTGATCAAGGCCATTGCTGATCAATTTGGAACATTGGACATACATACAGGTTCAACCTCTGACGCCCTTAATGGAAAATGTCATCTCAATGACATGTCTCAATATGAATCTTCTGTGTCTATCACTGCTGATCATGATCCAGACAACCTTCAATTACTAACTCCAGCTAAGAGAATGTCGGTTGACTTAGATTTGGAACTGCCACAAAGCCCCATCTTTAAATCTACTCAGTTGTCATCTTCGAAGGTGGCAAAACATATCAAGACTGAGTGA 1551 0.3933 MSISRPFELVRDLNDSKHLWKIAVRITDIWYVQLPPKPGHLEMILMDCKGDKIQVSVKKEEFNQWKDHLVENHTYVMHNFNVFHNDLQFKACNHAYRLQFTAGTTLREKEVADIPQFQYVFKKFAEILAGDFDADLLVDIIGVVDKMVFSETQTSLKKVIFNLKDSSGEVMTCTLWDSHALKFCNCYNNITIGEPIIVLLTHARVKEGQGKYPPTVSNSWCGSKILIDDEIPDYQKYKDSFATLTLSCDSLSQGSSQLSQYSNLSDDDRFMYKAEVKSLYEIAALTSAEEITCVTIGTTAMFIVGKQGWYYDGCLKCTKKIDAKDVPFTCKCGTYNLMPTPRYKLDIKVIHENGSGRFVFWDRQCADIIGVSAFELRNRMVAEGEDDPKAFPLMLDMLLARTMAFRVKVQPSYHQSSVMRLSESTVLIKAIADQFGTLDIHTGSTSDALNGKCHLNDMSQYESSVSITADHDPDNLQLLTPAKRMSVDLDLELPQSPIFKSTQLSSSKVAKHIKTE* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1022 516 PANTHER REPLICATION FACTOR A 1, RFA1 27 376 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lan3g1022 516 CDD RPA1_DBD_C 273 409 IPR013955 -
Lan3g1022 516 Gene3D - 112 248 IPR012340 -
Lan3g1022 516 Gene3D - 262 433 IPR012340 -
Lan3g1022 516 CDD RPA1_DBD_A_like 21 105 - -
Lan3g1022 516 SUPERFAMILY Nucleic acid-binding proteins 6 108 IPR012340 -
Lan3g1022 516 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 27 376 - -
Lan3g1022 516 SUPERFAMILY Nucleic acid-binding proteins 284 415 IPR012340 -
Lan3g1022 516 CDD RPA1_DBD_B_like 139 241 - -
Lan3g1022 516 Pfam Replication factor-A C terminal domain 305 416 IPR013955 -
Lan3g1022 516 Pfam Domain of unknown function DUF223 42 135 IPR003871 -
Lan3g1022 516 SUPERFAMILY Nucleic acid-binding proteins 121 243 IPR012340 -
Lan3g1022 516 Gene3D - 6 108 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1022 Lan-Chr3 22537337 22541086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1022 20 410 Core DNA Replication Machinery Family AT4G19130 21.394 1.43e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1022 - - lang:109343677 1025.39