LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan3g1008	ATGAATCTCTTTACCATCACCCTTACCTTCACTTTGACCATATCATTTAGCTTCTATATGATTCTGGGGCAGCAACCTTACATTGGTGTAGCCACAAGTGCATGTTCTGAAACGGGTAACTTCAACTCTATCCTTGGTTATACTTGTTATGAAGTAAGTCCTAGTTGCCAAGCTTACCTAACCTTCAGAACTCAACCCCTTTATAACTCTGTTTCCTCAATATCTAAGTTGTTGGGTTCTGACCCATCCAAGATTTCTGAAGCAAACTCAGTTTCTGAAGAAGCAACCTTTGAAACAAACAAGTTGGTGATTGTTCCAATCAATTGTTCTTGTGCTGGTGATCAGTATTATCAGTTCAACACATCCTTTATAGTACAACAAGATGACAACTATTTCGTTATTGCTAACAACACTTTCGAAGGGCTTTCAACCTGTCAAGCATTGCAGGATCAAAACAGAATTCCTGATGTAGATCTAGACGTTGGAACAAAACTTGTGGTTCCTCTTAGATGTGCTTGTCCTTCGAAGAATCAAACCGAGGAAGGTGTCAGGTACCTCATAAGTTACTTAGTAAAACCGGATGATGATGTTTCTCAAGTTAGTGAAAGATTTGGTGTTACAATTGAGACAATTCTTGAAGCTAATTCCCTTTCTTTGCAACAACCCACCATCAATCCCTTTACCACCCTTCTAGTACCCCTTCAAGATAAGCCTTCGAGTTCTCAAACTGTTGAACCACCTCTTCCTCCACCTCCTCCACCACCACCACCAGCATCACCATCCTCAAATGGAAGCTCAAGCAAAACATGGGTGTATATAGTTGTTGGAGTTGTTGGAGCCTTTGTCTTAATATTACTTATCTGCTCCATCATTGTTAGGAAACACTACCTTAATAAAAAGAGAAAGGACTCCGAGGCCGTGTCTGATAATTTCGCGGGGAAGGAGAAAGCACAAGGGAAGGAATTAGAGGACGAATCTAGAAAATTATTAGAGATCATATCAGGTATAGCTCAATCTTTCAAGGTCTACAGTTTCGAGGAACTACAGAACGCAACAAATAATTTTAGTCCTAAATGCCTTATCAAAGGGTCTGTTTATCATGGCGTTATCAACGGCGATTTGGCTGCAATTAAAAAGATAGATGGGGATGTGTCAAAAGAGATAGAACTACTGAACAAAGTGAACCATTCTAATGTGATTCGACTTTCGGGGGTTAGCTTCAAAGATGGCCATTGGTATCTTGTTTATGAGTATGCTGCAAATGGAGCATTGAGTGATTGGATCTACTTTAACAACAATGATGAGAATAAGTCTCTTACTTGGACTCAGAGAATACAAATTGCATTGGATATAGCCACAGGACTTGATTATCTTCACAGTTTAATTTCTCCTCCCTATATCCACAAGGATCTGAAGTGTAGTAACATTCTTTTGGACATTGATTTCAGGGCAAAGATTGCAAACTTTGGCCTAGCCAGGTCATTGGAATTAGAAAATGACCAAAATGTCATAACAAGACATATTGTTGGGACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTTTGGTATCTACAAAACTTGATGTCTATGCATTTGGGGTTATGATGTTGGAAATCCTCAGTGGAAAAGAAGTTGCTGCTCTTTATGAAGAAAGTGATTTCAATTTGTCTAGTGTTGTACAGGGTGAACATGAGAGGTTAAGGGACTTTATGGATGCTTCAATGCAAGGAAATTATCCATTGGAACTAGCCATATTTGTATGTGGAATGATAGATGATTGCATGAAGAAAGATCCAACAACTCGTCCTTCCATGAATGAGATTGTGACATCTTTGTCTAAAGCCTTTGATTCTTCGTTGAGCTGGGAATAA	1878	0.3919	MNLFTITLTFTLTISFSFYMILGQQPYIGVATSACSETGNFNSILGYTCYEVSPSCQAYLTFRTQPLYNSVSSISKLLGSDPSKISEANSVSEEATFETNKLVIVPINCSCAGDQYYQFNTSFIVQQDDNYFVIANNTFEGLSTCQALQDQNRIPDVDLDVGTKLVVPLRCACPSKNQTEEGVRYLISYLVKPDDDVSQVSERFGVTIETILEANSLSLQQPTINPFTTLLVPLQDKPSSSQTVEPPLPPPPPPPPPASPSSNGSSSKTWVYIVVGVVGAFVLILLICSIIVRKHYLNKKRKDSEAVSDNFAGKEKAQGKELEDESRKLLEIISGIAQSFKVYSFEELQNATNNFSPKCLIKGSVYHGVINGDLAAIKKIDGDVSKEIELLNKVNHSNVIRLSGVSFKDGHWYLVYEYAANGALSDWIYFNNNDENKSLTWTQRIQIALDIATGLDYLHSLISPPYIHKDLKCSNILLDIDFRAKIANFGLARSLELENDQNVITRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVMMLEILSGKEVAALYEESDFNLSSVVQGEHERLRDFMDASMQGNYPLELAIFVCGMIDDCMKKDPTTRPSMNEIVTSLSKAFDSSLSWE*	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan3g1008	625	SMART	serkin_6	355	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan3g1008	625	Gene3D	LysM domain	173	246	IPR036779	-
	Lan3g1008	625	SUPERFAMILY	Protein kinase-like (PK-like)	337	614	IPR011009	-
	Lan3g1008	625	ProSiteProfiles	LysM domain profile.	187	232	IPR018392	-
	Lan3g1008	625	Gene3D	Transferase(Phosphotransferase) domain 1	420	622	-	-
	Lan3g1008	625	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468
	Lan3g1008	625	PANTHER	LYSM DOMAIN RECEPTOR-LIKE KINASE 4	1	625	-	-
	Lan3g1008	625	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED	1	625	-	-
	Lan3g1008	625	Pfam	Protein kinase domain	375	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan3g1008	625	ProSiteProfiles	Protein kinase domain profile.	330	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan3g1008	625	Gene3D	Phosphorylase Kinase; domain 1	329	418	-	-
	Lan3g1008	625	MobiDBLite	consensus disorder prediction	243	261	-	-
	Lan3g1008	625	Pfam	LysM domain	124	168	IPR018392	-
	Lan3g1008	625	Pfam	LysM domain	189	233	IPR018392	-
	Lan3g1008	625	CDD	LysM	187	232	IPR018392	-
	Lan3g1008	625	SMART	LysM_2	188	233	IPR018392	-
	Lan3g1008	625	SMART	LysM_2	122	168	IPR018392	-
	Lan3g1008	625	MobiDBLite	consensus disorder prediction	236	263	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan3g1008	Lan-Chr3	22031994	22034108	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan3g1008	14	625	Receptor kinase-like Gene Family	AT2G23770	44.444	2.19e-170	497

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Lan3g1008		Pkinase	9.8e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan3g1008	-		-	aip:107626052	815.453