Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0999 ATGACTCAGAAGCAGAATGTGATAGTGTCTGAAACCAAATCTGAAGTTGTGGCACAAAATAAGCCACTTGGAGGAGGGTACATTTCCATTTCAAGGAAGAATATTTTGAAGAAACTTGAAATCAATGGTGGAAGAGTTAATGGTTGGATTGAGAATATGAGAGCTTCTTCTCCAACACACCCTTCTTTGTCTCAAGACCAAACCTCTTGGAATGTTCATCATCCATCAGCATTAGACATGTTTGACCAAATTATGGAATCATCAAAGGGAAAGCAAATAGTCATGTTTCTAGACTATGATGGTACACTCTCCCCTATAGTTGAAGACCCTGACCGTGCTTTCATGTCCAATTCGATGAGAAAAACAGTGAGGAAACTAGCAAGGTGTTTTCCAACAGCTATAGTGACTGGCAGATGCAAAGACAAGGTGTACAATTTTGTTCGCTTGGCAGAGTTATACTATGCTGGAAGTCATGGTTTAGACATTAAAGGACCAACTAGAAGCTCCAAGTACAACAAAGATAGGAAAGGAGAGACACTTCATTTTCAACCTGCTAGTCAATTTCTTCCAATGATTGACGAGTTGTACCAACGATTGGTTGATAAGACAAAATCAGTTCCTGGTGCCATGGTGGAGAATAACAAGTTCTGTGTCTCTGTTCATTTTCGTTGTGTTGATGAGAAGAAATGGAGTGAACTAGCACACCAAGTGAAATCAGTTTTAAAGGACTACCCCAAGCTTCGTCTCACCCAAGGAAGAAAGGTACTAGAGATTCGTCCTACTATTAAATGGGACAAAGGAAAAGCCTTGGAATTTTTATTGGAGTCACTTGGATTAGCACATTGTAATGATGTCTTTCCTGTATATATTGGTGATGATCAAAATGATGAAGATGCTTTTAAGAAATTAAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCAAAATTCCCAAAGGAAACAAGTGCATATTACTCATTACAAGAACCCAAAGAGGTAATGGACTTTCTTCAACGTTTGGTAGAGTGGAAAGAAGTTTCACTAAGTGCACATTCTCGGGTATAA 1065 0.3897 MTQKQNVIVSETKSEVVAQNKPLGGGYISISRKNILKKLEINGGRVNGWIENMRASSPTHPSLSQDQTSWNVHHPSALDMFDQIMESSKGKQIVMFLDYDGTLSPIVEDPDRAFMSNSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGLDIKGPTRSSKYNKDRKGETLHFQPASQFLPMIDELYQRLVDKTKSVPGAMVENNKFCVSVHFRCVDEKKWSELAHQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLAHCNDVFPVYIGDDQNDEDAFKKLRDRGQGFGILVSKFPKETSAYYSLQEPKEVMDFLQRLVEWKEVSLSAHSRV* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0999 354 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 350 IPR044651 GO:0004805|GO:0005992
Lan3g0999 354 Gene3D - 93 182 IPR023214 -
Lan3g0999 354 Gene3D - 193 352 IPR023214 -
Lan3g0999 354 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 95 306 IPR006379 -
Lan3g0999 354 Pfam Trehalose-phosphatase 96 330 IPR003337 GO:0003824|GO:0005992
Lan3g0999 354 CDD HAD_TPP 94 334 - -
Lan3g0999 354 TIGRFAM T6PP: trehalose-phosphatase 91 341 IPR003337 GO:0003824|GO:0005992
Lan3g0999 354 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 1 350 - -
Lan3g0999 354 SUPERFAMILY HAD-like 94 343 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0999 Lan-Chr3 21754442 21771919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0999 89 340 Trehalose Biosynthesis Gene Families AT1G70290 24.723 4.31e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0999 K01087 - gmx:100794430 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0069 15 438638 442446 Lan3g0999 3 21754442 21771919 LSH
Lan14g0185 14 2244411 2254698 Lan3g0999 3 21754442 21771919 LSH