Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0992 ATGAATTCACCATCGACGCAGTTTGTTTCCTCGAGAAGGATGAGTGTATATGATCCGATCCACCAGATTAATATGTGGGGAGAAAACTTCAAAAGTAACGGTAATTTAGGTGCATCCATGCCCTTAATTGACGAGTCGAACCTGAAGTTTGATAATCAGTCAGAGGATGCTTCTCACGGCGTTCTCGGAACATTTAAGACGTACGACCGAGAAGCGAATAAACCTGTTGCTAATAAGACACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGCAAGAGTCGTTTGCGGAAAAAGGCCTATGTGCAGCAGTTAGAATCGAGTCGGCTGAAATTGATGCAGTTGGAGCTAGAGCTTGAACATGCAAGGCAGCAGGGGTTATATGTAGGTGGAGGTTTGGATTCTAATCCTCTTGATTTTCCGGAACCTGTAAATTCAGGAATTACAATCTTTGAGATGGAGTATGGACTCTGGGTGGAAGAGCAAAATAGACAAATCTTAGAACTGAGAACTGCTTTAAATGCTCATATTGGTGACATAGAGCTAAGGATACTAGTAGAAGGCATAATGAACCACTATTCTGAAATATTTCGGATGAAATCTGCTGCGGCGAAAGCAGATGTTTTCTATGTTATGTCTGGCATGTGGAAAACAACAGCCGAAAGATTCTTTTTGTGGATCGGAGGCTTTCGCCCCTCCGAGCTTCTAAAGGTTCTTCTTCCTTTGATTGAACCTTTGATAGAGCAACAAAGATTGGATCTTCAAAACCTTGGAAAATCATGTCAGCAAGCAGAAGATGCTCTTTCACAAGGTATGGATAAACTTCAGCAAACACTTGCTGAAAGTGTAGCAACTGGACAACTCATCCAAGGATCCTATGTTCAACAAATGGCTTCTTCAATGGAGAAGTTGGAAGCTTTGGTGTGCTTTGTGAACCAGGCTGATCATCTTCGGCAGGAAACCATGCTGCAAATCTCTCGAATACTGACAACCCGTCAGGCTGCTCGATATTTTCTTGTTTTCGGCGAATATTTCCAACGCCTTAGAGGTTTGAGCTCACTATGGTCTAATCAACCTCGCGAACCTGCATAG 1092 0.4304 MNSPSTQFVSSRRMSVYDPIHQINMWGENFKSNGNLGASMPLIDESNLKFDNQSEDASHGVLGTFKTYDREANKPVANKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLELELEHARQQGLYVGGGLDSNPLDFPEPVNSGITIFEMEYGLWVEEQNRQILELRTALNAHIGDIELRILVEGIMNHYSEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLLPLIEPLIEQQRLDLQNLGKSCQQAEDALSQGMDKLQQTLAESVATGQLIQGSYVQQMASSMEKLEALVCFVNQADHLRQETMLQISRILTTRQAARYFLVFGEYFQRLRGLSSLWSNQPREPA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0992 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Lan3g0992 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 362 - -
Lan3g0992 363 Pfam Seed dormancy control 166 240 IPR025422 GO:0006351|GO:0043565
Lan3g0992 363 SUPERFAMILY Leucine zipper domain 79 114 IPR046347 GO:0003700|GO:0006355
Lan3g0992 363 Coils Coil 247 267 - -
Lan3g0992 363 PANTHER TRANSCRIPTION FACTOR TGA1 1 362 - -
Lan3g0992 363 Gene3D - 77 127 - -
Lan3g0992 363 Coils Coil 98 125 - -
Lan3g0992 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Lan3g0992 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 120 IPR004827 GO:0003700|GO:0006355
Lan3g0992 363 Pfam bZIP transcription factor 79 108 IPR004827 GO:0003700|GO:0006355
Lan3g0992 363 SMART brlzneu 74 135 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0992 Lan-Chr3 21625058 21629830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0992 1 363 Calmodulin-binding Proteins AT5G65210 66.576 2.29e-176 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan3g0992 DOG1 5.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0992 K14431 - gmx:100793353 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0080 15 555028 561098 Lan3g0992 3 21625058 21629830 LSH
Lan1g1835 1 33384246 33387624 Lan3g0992 3 21625058 21629830 PCT