Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0987 ATGGTTTCTAGAGAGCAAAAGAGAACTGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTATTACTAACTCCCATGCTTCAAGCAAAACCTCGATCATAAATGATGCATCAAAGTATATAGAAAAACTGAAGAAAAAAGTTGAAAGACTGAATCAAGACATGGCCACAGCAGAAACTTCAAGTGACCAAAATTCTTTGCCTATGGTAACAGTAGAAACCCTAGGAAAGGGATTTCTTGTTAATGTTATTTCAGCAAATAGCTGTCCAGGATTACTTGTTTCAATATTGGAGGCTTTTGAAGAGATAAATCTTAATGTGGTGGATGCTAGAGTTTCTTGTGCAGATACTTTTCGATTTCAAGCAATTGGAGAAAATGAAGAACAAGGTGATGGTATTGATGTAGAAGCTGTGGAACAAACAGTGACACAAGCAATCAAGAACTGGAACAAAAGTAGTGATCAACAATAA 468 0.3675 MVSREQKRTALHEKLQLLRSITNSHASSKTSIINDASKYIEKLKKKVERLNQDMATAETSSDQNSLPMVTVETLGKGFLVNVISANSCPGLLVSILEAFEEINLNVVDARVSCADTFRFQAIGENEEQGDGIDVEAVEQTVTQAIKNWNKSSDQQ* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0987 155 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 154 - -
Lan3g0987 155 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 58 IPR036638 GO:0046983
Lan3g0987 155 CDD ACT_UUR-ACR-like 79 145 - -
Lan3g0987 155 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 154 - -
Lan3g0987 155 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0987 Lan-Chr3 21586521 21591017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0987 11 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.452 6.07e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0987 - - gmx:100814138 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0175 14 2127037 2130808 Lan3g0987 3 21586521 21591017 LSH
Lan3g0987 3 21586521 21591017 Lan9g1359 9 20695065 20697186 PCT
Lan9g1359 9 20695065 20697186 Lan3g0987 3 21586521 21591017 PCT