Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0984 ATGGATTCAAATCCTCACCCTCCTTCCGATACTCCTCCAAACACCAACGGTAACGGCACCACCGCCACCGAGACGTGCCACGTCACCGATAACCCGATCCAATCCGATACCGCCGGCAACACTCGCAGCGGCGCCGATAAGGATCAATCCGGCGGCGAGGGAGAGACCACAAGCAAGCGCCGCCGCCGCAAATCCCGGTGGGACCCTCCGCCTGAGTCCAACAACTCTGACAGCGAATCGGCCGGTACCGGAACAACGACGAAGAAGAGGAAATCGCGTTGGGCGGATGATGAACCGAAACCGGTGATCCAGCTTCCTGGATTCATGGTAGGTATCGAATTCGATCCCGAAATTCAAGCATTGAATAGTAGGCTTTTAGAAATTAGTAGAATGTTGCAATCAGGTTTACCTTTAGATGATAGACCCGAAGGTGCTCGATCACCTTCGCCCGAACCGGTTTATGATAACATGGGAATTAGAATTAATACTAGAGAGTTTCGAGCTCGCGAGAGATTGCAAAAAGAGAAGCAAGAAGTTATATCTCAGATTATAAAGAAAAACCCTGCGTTTAAACCGCCTGCGGATTATAGGCCGCCTAAGGTTCAGAAGAAGCTTTATATACCGATGAAAGAGTACCCTGGTTATAATTTCATTGGGCTGATTATTGGTCCGAGAGGTAACACACAGAAGAGGATGGAGAAAGAAACTGGTGCGAAAATTGTGATCCGTGGGAAAGGGTCGGTGAAAGAAGGTAGATTGCAGCAGAAGAGGGATTTGAAACATGATCCTTCTGAGAATGAGGATTTGCATGTTTTAGTGGAGGCGGACACACAGGAAGCGGTAGATGCTGCTGCTGGTATGGTGGAGAAGCTATTGCATCCTGTGGATGAGGTGCTGAATGAGCATAAGAGGCAACAACTTAGGGAACTTGCAGCGTTGAATGGGACAATTAGGGATGAGGAGTTTTGCCGGTTGTGTGGTGAGCCTGGTCATCGCCAGTATGCATGTCCTACGAGGACTTCAACGTTTAAGAGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCAACTATAGATTGTCCTGTGAAGGGTGGTACCGGGAAAAAGATGGATGATGAGTATCAGAACTTCCTTGCAGAGTTGGGAGGTTCAGTTCCTGAATCTGCATTAAAACAAACTAGTACTTTGGCAATTGGTTCAGGCAGTTCTGGAACCAATCCTCCTTGGGCTTCAAAATATTCTGGCTCTGCTGGTGATGCACCACAAGCTGGATTTGGGGCTAGTGCAGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACCCTTGAAGATGATGGTCTAATCCAATTATTTCAACAATTCGGTGAGATTGTCATGGCAAAAGTTATCAAGGATCGAGTTACAGGTTTCAGTAAAGGATACGGGTTTGTGAAGTATGCTGATGTTCAAATGGCAAACAATGCAATTTCGGCTATGAATGGCTATCGTCTTGATGGTCGGGCCATAGCAGTGAGAGTTGCTGGTATAATTCCTCAGCCTGTTGTACCTCCTGGCCCACCTGCATCTGCTGTCCCTACTTATCCTATTCAAAGCCAGCCGCTTGGTGCCTACCCATCCCAACAATATGCTGGTGGTGGTCCCCTTGGGAGTGCTATCCCCGGGAGTTATGGTGGTGCTGCAGTTCCATGGGGACCCCCTGTTCCTCCTCCATACACTCCTTATGCTCCACCTCCACCTGGGTCAACCATGTATCCTCCTTTCCAAGGTCAACCTATGCCTCCTTATGGTGTTCAATATCCTCCTATCCAGACAGGACCCCCTGGTACCCAATCACAGCCTGCAATTTCTAGTGAAGTGCAGCAGAGTTACCCTCCTGGAGTGCAATCTGACAGTAGCACCTCTACTCACTCTGTACCAGCCAATATATATGGGAACTCGACACCTTCAATGCCACCAGCAGCTCTGCCTACGTATCCTGCTTCTTATGGTTATCCACCCTACTACAGTGTAGTTCCTCCACCCCTGGTTCCTGTCTCGACTTCAGATCAATCCCCCAGCATTGTGAATGTGCCTTGGGCCAGTAATCCTCCGGTTCCCCCTCCTACTGCATCTAAAGATCAACTCCAAGGCATTGGAAATGTGCCTTGGGCTGCTAATCCACCAGGGCCTCCTCTTGCTGCATTAGCTGAAAAGACATCATCATATGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2274 0.4842 MDSNPHPPSDTPPNTNGNGTTATETCHVTDNPIQSDTAGNTRSGADKDQSGGEGETTSKRRRRKSRWDPPPESNNSDSESAGTGTTTKKRKSRWADDEPKPVIQLPGFMVGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNMGIRINTREFRARERLQKEKQEVISQIIKKNPAFKPPADYRPPKVQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKHDPSENEDLHVLVEADTQEAVDAAAGMVEKLLHPVDEVLNEHKRQQLRELAALNGTIRDEEFCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPTIDCPVKGGTGKKMDDEYQNFLAELGGSVPESALKQTSTLAIGSGSSGTNPPWASKYSGSAGDAPQAGFGASAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRVTGFSKGYGFVKYADVQMANNAISAMNGYRLDGRAIAVRVAGIIPQPVVPPGPPASAVPTYPIQSQPLGAYPSQQYAGGGPLGSAIPGSYGGAAVPWGPPVPPPYTPYAPPPPGSTMYPPFQGQPMPPYGVQYPPIQTGPPGTQSQPAISSEVQQSYPPGVQSDSSTSTHSVPANIYGNSTPSMPPAALPTYPASYGYPPYYSVVPPPLVPVSTSDQSPSIVNVPWASNPPVPPPTASKDQLQGIGNVPWAANPPGPPLAALAEKTSSYGADSEYEKFMAEMK* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0984 757 MobiDBLite consensus disorder prediction 13 47 - -
Lan3g0984 757 SUPERFAMILY RNA-binding domain, RBD 435 515 IPR035979 GO:0003676
Lan3g0984 757 CDD SF1_like-KH 202 318 - -
Lan3g0984 757 MobiDBLite consensus disorder prediction 1 101 - -
Lan3g0984 757 Gene3D - 321 374 - -
Lan3g0984 757 ProSiteProfiles Zinc finger CCHC-type profile. 349 363 IPR001878 GO:0003676|GO:0008270
Lan3g0984 757 ProSiteProfiles Zinc finger CCHC-type profile. 323 337 IPR001878 GO:0003676|GO:0008270
Lan3g0984 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 439 517 IPR000504 GO:0003723
Lan3g0984 757 MobiDBLite consensus disorder prediction 247 266 - -
Lan3g0984 757 SMART c2hcfinal6 348 364 IPR001878 GO:0003676|GO:0008270
Lan3g0984 757 SMART c2hcfinal6 322 338 IPR001878 GO:0003676|GO:0008270
Lan3g0984 757 MobiDBLite consensus disorder prediction 48 70 - -
Lan3g0984 757 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 441 510 IPR000504 GO:0003723
Lan3g0984 757 Gene3D - 404 517 IPR012677 -
Lan3g0984 757 MobiDBLite consensus disorder prediction 589 609 - -
Lan3g0984 757 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 704 757 - -
Lan3g0984 757 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 39 705 - -
Lan3g0984 757 Pfam KH domain 216 289 IPR004088 GO:0003723
Lan3g0984 757 MobiDBLite consensus disorder prediction 137 156 - -
Lan3g0984 757 MobiDBLite consensus disorder prediction 589 658 - -
Lan3g0984 757 SUPERFAMILY Retrovirus zinc finger-like domains 319 365 IPR036875 GO:0003676|GO:0008270
Lan3g0984 757 SMART rrm1_1 440 513 IPR000504 GO:0003723
Lan3g0984 757 Gene3D K Homology domain, type 1 198 320 IPR036612 GO:0003723
Lan3g0984 757 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 201 327 IPR036612 GO:0003723
Lan3g0984 757 MobiDBLite consensus disorder prediction 84 98 - -
Lan3g0984 757 Gene3D - 115 193 - -
Lan3g0984 757 MobiDBLite consensus disorder prediction 611 658 - -
Lan3g0984 757 Pfam Splicing factor 1 helix-hairpin domain 90 197 IPR032570 -
Lan3g0984 757 ProSiteProfiles Type-1 KH domain profile. 216 288 - -
Lan3g0984 757 PANTHER RNA-BINDING PROTEIN RELATED 39 705 IPR045071 -
Lan3g0984 757 PANTHER RNA-BINDING PROTEIN RELATED 704 757 IPR045071 -
Lan3g0984 757 SMART kh_6 201 293 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0984 Lan-Chr3 21550776 21556898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0984 439 515 Eukaryotic Initiation Factors Gene Family AT1G49760 36.364 2.91e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0984 K13095 - gmx:100800982 1082.01