Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0977 ATGGGTTCTGATTTCCAAAACAAAGCTTTAACAAGTACTCGTTTTTCTGAGTTAAACCCATCACTCTCTGAACCAGTTCTCAATGCTCTATCAGATTCTGGCTTCGATTTCTGTACTCCGGTTCAAGCCGCCACCATTCCTTTGCTCTGCACCTTCAAGGATGTCGCCGTCGACGCCGCCACCGGTTCCGGAAAAACCCTAGCTTTTGTTGTCCCTCTTGTTGAGATTCTTCGCCGCTCTTGTCCTCACCCTAAGCCTCATCAGGTGCTAGGAATAATCATATCTCCCACAAGGGAGTTATCGTCACAAATATACCATGTTGCACAACCTTTCATTTCAACTTTGGGGGATGTTAAGTCCATACTCCTCGTTGGAGGGGCTGAAGTGAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAACGTATTGATTGGAACGCCTGGGCGACTATATGACATAATGAATCGGGTGGATGGCCTCGATTTTAAAAACCTTGAGATTTTGATTCTAGATGAAGCTGATAGACTCCTAGATATGGGATTCCAGAAGCAAATAACTTCTATTATATCTCTTTTGCCCAAGCTTCGGAGAACTGGTCTATTCTCTGCTACTCAAACTGAGGCCGTTGAAGAGCTTGCTAAAGCAGGGTTGAGGAATCCTGTGAGAGTTGCAGTTCGGGCTGAAGCTAAATCATCCGATGATCCTGCAACGTCAAAACAACTAGAATCTTCGAAAACACCTTCCGGACTTCACATTGAGTACGTGGAATGTGAGGCAGACAAGAAGCCGTCACAGCTAGTAGACATCCTTATTAAGAACCGCTCAAAAAAAGTTATAATATATTTCATGACTTGTGCTTGTGTGGACTACTGGGGAGTTGTACTTCCTCGTCTTTCTGTTTTGCAAGGCTTCTCCTTGATCTCCCTTCACGGAAAGATGAAACAGACTGTCAGGGAGAAAGCATTAGCTTCATTCACATCCCTTTCAAATGGAATTCTTCTATGTACTGACGTTGCAGCGCGTGGTCTTGACATACCGGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCGTACATAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGACATGCTGTTGTGTTCTTATTGCCTAAGGAAGAATCTTATGTGGAATTTCTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGAAGCTGCTCTGATGATGCACCTGATGTTGTTCCTCAGATACGCGCTGCTGCTAGAAAAGATCGTGATATCATGGAGAAAGGAGCCAGGGCATTTGTTTCTTACATGCGTGCTTATAAAGAGCATCATTGCTCATATATTTTTAGGTGGAAAGAACTTGAAATCGGTAAACTGGCCATGGGATTTGGCTTATTGCAACTTCCTTTAATGCCAGAAGTTAAGCACTACAAACTTTCCACCGAAGGATTTGTACCAGTTGAAGATATCAAGTTTGCGGACATCAAGTTCAGGGATAAATCACGTGAGAAACAAAGGAAAAAGAACTTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGGTAAAACCTAAAAAACCAAGCAAAACCCCGATTTCATCTACTGTCATGAGGAAGAAAACAGCCAAACAGAGACGTGCTCAGCAGACAGCTGAAGATGAGGAAGAGTTGACGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGATTATAGACGAGAATGAATATGCCAAGTTGACAGGCACAGAGGAATTGCTTTGA 1770 0.4316 MGSDFQNKALTSTRFSELNPSLSEPVLNALSDSGFDFCTPVQAATIPLLCTFKDVAVDAATGSGKTLAFVVPLVEILRRSCPHPKPHQVLGIIISPTRELSSQIYHVAQPFISTLGDVKSILLVGGAEVKADMKKIEEEGANVLIGTPGRLYDIMNRVDGLDFKNLEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVAVRAEAKSSDDPATSKQLESSKTPSGLHIEYVECEADKKPSQLVDILIKNRSKKVIIYFMTCACVDYWGVVLPRLSVLQGFSLISLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERSCSDDAPDVVPQIRAAARKDRDIMEKGARAFVSYMRAYKEHHCSYIFRWKELEIGKLAMGFGLLQLPLMPEVKHYKLSTEGFVPVEDIKFADIKFRDKSREKQRKKNLQAKKEAKEKEVKPKKPSKTPISSTVMRKKTAKQRRAQQTAEDEEELTQEYRLLKKLKKGIIDENEYAKLTGTEELL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0977 589 SMART DUF4217_3 413 476 IPR025313 -
Lan3g0977 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Lan3g0977 589 Pfam Domain of unknown function (DUF4217) 416 473 IPR025313 -
Lan3g0977 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Lan3g0977 589 Coils Coil 503 525 - -
Lan3g0977 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Lan3g0977 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Lan3g0977 589 CDD SF2_C_DEAD 254 384 - -
Lan3g0977 589 SMART helicmild6 290 375 IPR001650 -
Lan3g0977 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Lan3g0977 589 Gene3D - 3 227 IPR027417 -
Lan3g0977 589 PANTHER RNA HELICASE 23 587 - -
Lan3g0977 589 CDD DEADc_DDX55 26 224 - -
Lan3g0977 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Lan3g0977 589 MobiDBLite consensus disorder prediction 506 558 - -
Lan3g0977 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 23 587 - -
Lan3g0977 589 SMART ultradead3 34 254 IPR014001 -
Lan3g0977 589 Gene3D - 253 481 IPR027417 -
Lan3g0977 589 MobiDBLite consensus disorder prediction 506 529 - -
Lan3g0977 589 Coils Coil 539 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0977 Lan-Chr3 21468209 21472778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0977 21 389 Eukaryotic Initiation Factors Gene Family AT3G13920 30.811 4.92e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0977 K14809 - gmx:100801482 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0100 14 1321595 1328240 Lan3g0977 3 21468209 21472778 LSH