Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0970 ATGGCTTCTCAACTTAGCAATTTCATCCTTCGACATTTTGTTTTGGCTATTCTAGTTCCTACCCTTTTCACTCCAAACTTCACCTATGCCAAGAAATCCAAGATCATTGGCTTGCAAATGAATGTAATTGATAAATGTTGGAGATCAGATCCTGAATGGAGGAAGCATCGGCCACAACTTGCTAGATGCTCAATGGGTTATGCCGGGAAGATGACAAATAACATTGGTGAAGGCCTCATCCATTATAAAGTTACTGATCCTAGTGATGACCCTATAAACCCTAAATATGGCACCTTGAGGTATGGAGCATCTGTGATCCAAGGGAAAGTATGGATTACATTCCAAAGAGACATGGTTATTAGGTTAGTGAGACCACTTCTCGTTAGTAGTTTCACCACCATTGATGGTCGAGGAGTTGATGTCCACATTGCTCATAATGCATGTTTAATGATCTTTAAGGCTACCGACATAATCATTCATGGCCTCCGTATTCATCATTGCAAACCTCAAGCACCTGGGATGGTGATGGGACCTAATGGAAAGGTTATGCCTTTAGGTAAAGTAGATGGGGATGCAATCCGATTAGTTACCGCTTCAAAAATTTGGATTGATCATAATACACTTTATAATTGCCAAGATGGTCTTCTTGATGTTACACGAGGTTCCACTGATGTGACTGTCTCGAACAATTGGTTCAGATTTCAAGACAAGGTTATGCTTCTGGGGCACGATGATGGATATATTAGAGACCAAAACATGAAGGTCACTGTTGTGTATAACCATTTTGGACCTAATTGCAACCAACGCATGCCAAGGATTCGACATGGATATGCACATGTAGCCAATAATCTTTACCTTGGATGGTTGTAA 870 0.4069 MASQLSNFILRHFVLAILVPTLFTPNFTYAKKSKIIGLQMNVIDKCWRSDPEWRKHRPQLARCSMGYAGKMTNNIGEGLIHYKVTDPSDDPINPKYGTLRYGASVIQGKVWITFQRDMVIRLVRPLLVSSFTTIDGRGVDVHIAHNACLMIFKATDIIIHGLRIHHCKPQAPGMVMGPNGKVMPLGKVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTVSNNWFRFQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0970 289 Pfam Pectate lyase 128 285 IPR002022 -
Lan3g0970 289 PANTHER PECTATE LYASE 18-RELATED 3 289 IPR045032 GO:0030570
Lan3g0970 289 SMART amb_all 117 288 IPR002022 -
Lan3g0970 289 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Lan3g0970 289 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Lan3g0970 289 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Lan3g0970 289 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Lan3g0970 289 PANTHER PECTATE LYASE 3 289 - -
Lan3g0970 289 Gene3D - 40 289 IPR012334 -
Lan3g0970 289 SUPERFAMILY Pectin lyase-like 40 288 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0970 Lan-Chr3 21400950 21414583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0970 71 288 Polysaccharide Lyase AT5G09280 72.477 6.48e-125 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0970 K01728 - gmx:100780437 516.153