Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0960 ATGGAACCTCGCGTTGGGAATAAATTTCGTCTCGGCCGAAAAATCGGTAGCGGCTCGTTCGGGGAGATCTATTTAGGTACTAATGTTCAAACTAATGAGGAGGTTGCAATTAAGCTTGAAAACGTCAAGACAAAGTACCCTCAACTGCTCTATGAGTCCAAGTTGTACAGAATTCTTCAGGGGGGAACTGGAATTCCAAATGTGAAATGGTTCGGAGTGGAGGGAGATTACAATGTTCTTGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTCTCACTAAAAACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTGTTCACTCTAAATCATTTCTTCATCGGGATATCAAACCAGATAATTTCCTCATGGGCCTGGGAAGGCGGGCAAATCAGGTATACTGCATTGATTTTGGTTTGGCGAAGAAATACAAAGATAGTTCAACCCATCAACACATTCCATACAGGGAGAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGTCGAAGGGATGATCTAGAGTCTCTTGGTTATGTCTTGATGTACTTCCTGAGGGGAAGTCTTCCTTGGCAAGGACTTAAAGCAGGAAATAAGAAACAGAAGTATGAGAAAATCAGTGAAAAAAAGGTTTCTACCTCGATAGAGGCCTTGTGTCGAGGCTATCCAACTGAATTTGCATCTTACTTCCATTACTGTCGATCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACTATCTTGAAGTATCAACAATCACAGCTAGCTACTCCTCCGACACGTGGCATTGGTCCTGGCGCTGGAACTAGTTCTGGATTGCCTCCGGCTGTGACTAATGCTGATAGACAGACAGGAGGGGAAGAAGGGCGACCACCTGGACTGGTGTCAGCGGAGTCCTCGCGTCGAAGAATGCCAGGGCCCGTTGTAAATTCTGCAAGTTTTTCAAAGCAGAAAAGTCCAATCATGAATGATTCTGCTGTTAACAAGGATGCTGCGATATCAAGTACCAATTTCATGGGCCAGTCAAGCGGATCAAGGCGATTTGCTCTCTCTGGTAGCCGTGAGGCATTTGTTGGCAGTGAATCAGATATTCGTACTCGTACAACTGAGGCTGGCTCCGGAGCAGCATACAAAATTTCGAGTGGGCAAAGAAATTCACCAATTGGATCTTCAGATCCCAAGAGAGCAGTGTCATCTGCAAGAAACACTTCCGATGTCAAGAACTATGAAACTGCCGTCAAGGGCATTGAGGGTTTGCAGTTAGAGAATGACGAGAGGACCCATCACTGA 1425 0.4386 MEPRVGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVAIKLENVKTKYPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYKDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRGIGPGAGTSSGLPPAVTNADRQTGGEEGRPPGLVSAESSRRRMPGPVVNSASFSKQKSPIMNDSAVNKDAAISSTNFMGQSSGSRRFALSGSREAFVGSESDIRTRTTEAGSGAAYKISSGQRNSPIGSSDPKRAVSSARNTSDVKNYETAVKGIEGLQLENDERTHH* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0960 474 MobiDBLite consensus disorder prediction 302 368 - -
Lan3g0960 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan3g0960 474 PANTHER CASEIN KINASE I-LIKE 1 457 - -
Lan3g0960 474 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Lan3g0960 474 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0960 474 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0960 474 MobiDBLite consensus disorder prediction 407 454 - -
Lan3g0960 474 MobiDBLite consensus disorder prediction 406 474 - -
Lan3g0960 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan3g0960 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0960 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lan3g0960 474 PANTHER CASEIN KINASE-RELATED 1 457 - -
Lan3g0960 474 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0960 Lan-Chr3 21170523 21179057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0960 7 219 EF-hand Containing Proteins AT2G17890 26.244 3.54e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan3g0960 Pkinase 2.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0960 K02218 - pvy:116113671 818.15