Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan3g0956 | ATGAAAAACCTTCCATCTCCTCTTTCAACACCTGAAGTGATAGATGTTGAAACCTTTCGTTTCACACCATTCTCTGACAAAGGTAAACACAAATCCACCGCTATCTCTGTTGAACATTACTCTCTCAACCCTCACTTGTACCTTCCCATTCTCATTGATCTCTCCGACTCTGATGATGATAAAAAAGACGACGTCACAATCCTCACTTCCAAGCCCCAAAACACTCCTTTTCAGAAACGTAAAAGAGTCTTCGAAATTGGAGAATCTTCTAATTCCAATAATAATACTATCACTCCTTTCTTATGTCATATTTGTACTGAAACCAAAACTCTAAACGATGCATTTCGTGTCCATAATTGCTCTCACTCTTACTGCACTGACTGTGTAGTAATGTACGTGGAATCAAAGCTTCAAGAGAATGTTGTTAAAATTCGGTGCCCTCAACCAGAATGTGAATTAGGGTTATTGGAGCTTCAAGGTTGCCGTGGAATTCTTCCGAAGGAAGTGTTTGATCGTTGGGGTGATGCATTGTGTGAGGCTATGATTCTTGAAAATGAGAAATTCTATTGTCCTTATAAGGATTGCTCTGCCCTTATGGTTAACGATGGTGGAGAGTTGGTGAAGGAATCTGAGTGCCCTAATTGTAGGAGATTGTTCTGTGCGCAGTGTAAGGTTTCGTGGCATGATGGGATTGAGTGTGATGAGTTTCAGAAACTGAATAAGGATGAAAGAGAAAAGGAAGATATCATGTTGATGAAGCTTGCCAATAATAACAAATGGAGCAGATGTCCAAAGTGCAGGTTTTATGTTGAGAGAACTGATGGATGCATGTACATCAAATGCAGGTGTGGACATGCCTTTTGTTACAACTGTGGAGCTCTTTCCAAAGATAATTCCCATTATTGCTACAACTGTAAACGCTGA | 924 | 0.4004 | MKNLPSPLSTPEVIDVETFRFTPFSDKGKHKSTAISVEHYSLNPHLYLPILIDLSDSDDDKKDDVTILTSKPQNTPFQKRKRVFEIGESSNSNNNTITPFLCHICTETKTLNDAFRVHNCSHSYCTDCVVMYVESKLQENVVKIRCPQPECELGLLELQGCRGILPKEVFDRWGDALCEAMILENEKFYCPYKDCSALMVNDGGELVKESECPNCRRLFCAQCKVSWHDGIECDEFQKLNKDEREKEDIMLMKLANNNKWSRCPKCRFYVERTDGCMYIKCRCGHAFCYNCGALSKDNSHYCYNCKR* | 308 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan3g0956 | 307 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 53 | 306 | - | - | |
| Lan3g0956 | 307 | ProSitePatterns | Zinc finger RING-type signature. | 120 | 129 | IPR017907 | - | |
| Lan3g0956 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 102 | 147 | IPR001841 | - | |
| Lan3g0956 | 307 | SMART | ring_2 | 102 | 149 | IPR001841 | - | |
| Lan3g0956 | 307 | SMART | ring_2 | 263 | 305 | IPR001841 | - | |
| Lan3g0956 | 307 | SUPERFAMILY | RING/U-box | 99 | 180 | - | - | |
| Lan3g0956 | 307 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 53 | 306 | IPR031127 | GO:0004842|GO:0016567 | |
| Lan3g0956 | 307 | SUPERFAMILY | RING/U-box | 244 | 306 | - | - | |
| Lan3g0956 | 307 | SUPERFAMILY | RING/U-box | 175 | 238 | - | - | |
| Lan3g0956 | 307 | ProSiteProfiles | TRIAD supradomain profile. | 98 | 307 | IPR044066 | - | |
| Lan3g0956 | 307 | SMART | ibrneu5 | 171 | 233 | IPR002867 | - | |
| Lan3g0956 | 307 | SMART | ibrneu5 | 243 | 305 | IPR002867 | - | |
| Lan3g0956 | 307 | Pfam | IBR domain, a half RING-finger domain | 182 | 233 | IPR002867 | - | |
| Lan3g0956 | 307 | Gene3D | - | 230 | 307 | - | - | |
| Lan3g0956 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 182 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan3g0956 | Lan-Chr3 | 20856185 | 20858240 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan3g0956 | 102 | 293 | C3H Transcription Factor Family | AT2G19610 | 29.703 | 6.53e-20 | 87.4 |