Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0953 ATGATGTTATATTCTCAGGGTTCTTCACGGCATTGTAGTCTACTTGCTATTCTAAGTGATAATTCACATGACAATAAGCTAAAGCAGAAGCAGAATGCTACTTCTGAGGAACAATCACTTTACCCCTTTCCAGACCTTTCTTCCTCCGGCCATCTTCAGGTTAAAGTTTTGACCAAACCTACTGCTGATGAACTCGGCCGAGTTCTTGAACAACTGCAGCCAGATTTTGTTTACCTGCAAGGCGAACAGCTGCAAGGTAGTGGAGAAATTGGGTCTCTTGCATGGGATGATTTTGACCTGTCTGTTCCAGAAGCCTTATGTGGATTATTTTCTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAAGGAGAAAAGTTGGCAGAGGCACTTCATTTTAAGGGAGTTCCTTATACAATCTATTGGAAAAATGAATTTTCAAAATATGCAGCTTCTCATTTTCATCAAGCTTTTTTCTCAGTGGCACAGAGTACATCAAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTTAGACTATACTGTGTACAAAACAACATCTTACCTTCTAACGGCCTGAAGAGTGATGCCGAGTTTGGGCCACAAATTCTTGGGGACCCTCCCAACATTGATATTGGTCCATGCGAAGCAGACATGAAGGAGGAGGAGGATGAAAGTTCACCCGAGACTATTTCTTCTGTAAAGATATATGATGATGATGTGAACATGAATGTTCTTGTTTGCGGAGTTCCCTGCACATTGGATGCTTGTTTATTGGGGCCACTAGAGGATGGACTCAACGCTCTCCTGTGTACTGAAATACGTGGATGTAAACTTCACAACAGGACCAGTGCTCCACCACCTCCTCTTCAAGCTGGAACATTTTCACGTGGTGTGGTGACCATGCGTTGCGATATATCTACAAGTAGTTCTGCGCATATATCACTTTTGGTATCCGGTAGTGCAGATACTTGTTTTAATGATCAGCTTTTAGAGAACCACATTAAAAAAGAGCTCATCGAGAAGATTCAGCTTGTCCAGGCATTTCTTAATGATCAAAAAAGCAAATTATCTTCTTCTGAGCCTCGAAGATCAGCCTCGGTAGCCTGTGGATCCAGTGTGTTTGAAGTCTGTATACGAGTTCCTACATGGGCTTCACAGGTTTTGCGACAGCTTGCACCAAATGTGTCATACCGCAGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGACTGCCTGTTGCATCTTTTAATCAAGATGATGCCGATCGTCTCCTTTTCTTTTGTACTAGGCAGGAGAAAGAAAACCGTCCTAACGATCCCATTGTCTCTGGGTATCCTAGTTGGCTGAAGCCTCCAGCACCTAGTCGAAAAAGATCTTTACCATGCTCTAGAACAAAATCTATGAATGCTAGTGGGATGGAAGTTGAGGATGTCGGTAGTTATAGACAGAAATTAAATTTGGCTGCAATGAGGCCAATCCCTCAATCTAATCGTCACAAGATTCTCCCATTTTCTGGATTTTCTGAGGCTGAAAGATATGACGGAGATATTGGAAAATCAAATCAGTTACTTGTTCCTGTTAAGCATAATGTTGTAGGCTCTAATACAGTTACACATAGGAAGTCTGTGTCAAACTCATTTCAAGCCCATCAGATTATTTCTTTGAATCCGCTACCTATGAAAAAGCATGGTTGTGGGAGAGCTCCAATACGAGCTTGCTTAGAGGAGGATTTCCTGAGGGATGTAATGCAGTTTCTGATGCTTCGGGGACATACTCGTCTCATTCCACAAGGTGGGCTTGCCGGGTTCCCTGATGCTGTTCTGAATGCAAAACGCCTTGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGAATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGCAATCACACTTTAACACACAGAATGACTGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTTTTAGAATATGAATTAGCTCACGATGACGTCGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCCGGTGACTGGGTGAACTGTGGTATATGTGGTGAATGGGCCCACTTCGGCTGTGATAGGCGGCAGGGACTTGGAGCATTTAAGGATTATGCTAAAACGGATGGACTGGAGTACGTTTGTCCGCACTGCAACGTATCAAATTTCGGTAAAAAATCCCAGAAAACTGGAAATGGATATTAA 2262 0.4266 MMLYSQGSSRHCSLLAILSDNSHDNKLKQKQNATSEEQSLYPFPDLSSSGHLQVKVLTKPTADELGRVLEQLQPDFVYLQGEQLQGSGEIGSLAWDDFDLSVPEALCGLFSSKLPNTVYLETPKGEKLAEALHFKGVPYTIYWKNEFSKYAASHFHQAFFSVAQSTSSHTWDAFQLALASFRLYCVQNNILPSNGLKSDAEFGPQILGDPPNIDIGPCEADMKEEEDESSPETISSVKIYDDDVNMNVLVCGVPCTLDACLLGPLEDGLNALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADTCFNDQLLENHIKKELIEKIQLVQAFLNDQKSKLSSSEPRRSASVACGSSVFEVCIRVPTWASQVLRQLAPNVSYRSLVMLGVASIQGLPVASFNQDDADRLLFFCTRQEKENRPNDPIVSGYPSWLKPPAPSRKRSLPCSRTKSMNASGMEVEDVGSYRQKLNLAAMRPIPQSNRHKILPFSGFSEAERYDGDIGKSNQLLVPVKHNVVGSNTVTHRKSVSNSFQAHQIISLNPLPMKKHGCGRAPIRACLEEDFLRDVMQFLMLRGHTRLIPQGGLAGFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCNVSNFGKKSQKTGNGY* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0953 753 CDD PHD_ARID4_like 686 737 - -
Lan3g0953 753 SUPERFAMILY ARID-like 579 691 IPR036431 GO:0003677
Lan3g0953 753 Gene3D - 574 679 IPR036431 GO:0003677
Lan3g0953 753 CDD ARID 579 676 - -
Lan3g0953 753 MobiDBLite consensus disorder prediction 443 479 - -
Lan3g0953 753 Pfam ARID/BRIGHT DNA binding domain 579 676 IPR001606 GO:0003677
Lan3g0953 753 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 753 - -
Lan3g0953 753 ProSiteProfiles ARID domain profile. 576 680 IPR001606 GO:0003677
Lan3g0953 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 742 IPR013083 -
Lan3g0953 753 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 753 IPR042293 -
Lan3g0953 753 SUPERFAMILY FYVE/PHD zinc finger 679 742 IPR011011 -
Lan3g0953 753 SMART ARID_2 573 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0953 Lan-Chr3 20825155 20833093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0953 2 752 ARID Transcription Factor Family AT3G43240 64.589 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan3g0953 ARID 9.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0953 - - gmx:100808357 1282.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0202 15 2177236 2184864 Lan3g0953 3 20825155 20833093 LSH