Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0951 ATGGCGTTTCAAGATTTCGCAATCTTATCCGAACGGAGAAGAAATGAAAGGAAAGAAAAAGTGAGGAAGAGGATTATCCTTGGTGTACTTTCATCCATTCTCCTTGTATGTGTCATAGGTGCTGCAACATTTGTTCTTGTCAACAAAACTGACCCTGATAATAATAATAATAATAATACCCACAAAAAACCTCCTTCAACAACTACCAATGCAAAAGTTGAAAATTACTTAAAGATTGTTAAAACAATTTGTAACTCGGTTGAATATAAGACCAAATGTGAAGGTCCCCTTAGCAAGGTGGTGGAGAATGACACCAAATTGGCACAACCAAAGGAACTTTTGAGGGTATCAATTAAACTTGCTGAACAAGAAATTAACAAGGCCTTCAACAAAACAACTTCAATGAAGTTCGAATCGGAAATGGACAAAGGAGCATATGAAGATTGCAAACAACTTATGAATGATGCTAGGGAAGAGATAGGATTCTCTATCTCTGAAGTGAGCAAAAATGATTTGAAGAAGCTTTCAACAAGAACACCTGAATTAAACAATTGGTTAAGTGCAGTCATATCTTATCACCAAACATGTATTGATGGGTTTCCTGATGGAGAATTGAAGAATGAACTTAAAAATCTCTTACAAGATCCACAAGAGTTTGTTAGCAATTCCCTTGCCATTGTGAAAGAGTTGTCTTATGTCCTATCTACAATCCAACCATCCACGGTTCGTCACTTACTATCGGCGAAAAGTGATGGATTTCCAACTTGGATTGGTGTTGAGGACCGGAGGATGTTGAAGGCAGCAGATGACAAGCCCACACCTAATGTCACCGTGGCGAAGGACAGCTCCGGGAACTTCAAAACCATATCTGAGGCTTTGGCAGCCATCCCACAAACATATACAGGACGCTATGTGGTTTATGTTAAAGAAGGAATATATGAGGAGCTAGTGACGGTGACAAAGAAAATGCAAAATCTAACCATTTATGGTGATGGATCACAAAAGAGTATTATCACTGGGAGCAAAAATTTTGCAGATGGAGTTAGGACTTTCCAAACAGCAAGCTTTGTGGTACTTGGAGATGGGTTCCTGGGAAAGGCAATGGGATTCAGAAACACTGCTGGAGCAGAAAAGCATCAAGCAGTGGCTGCTAGAGTACAAGCAGATCGTGCAATGTTTGTGAACTGTCGTTTTGAGGGCTACCAAGACACTCTATATGCCCAAACTCATAGACAATTCTATCGTAGTTGTGTCATTGCTGGTACAATAGATTTCATCTTTGGAGATGCTGCTAGTGTCTTCCAAAACTGCATTATGCAACTTCGAAAACCGATGTCGAATCAACAGAACATTGTCACTGCTCAAGGGAGATACCAAAAGCAAGAAACCACGGGTTTTGTTCTTCAAAAGTGTGAGATTAAAGCTGATAATACATTGGTTCCTGAGAAGGATAAAATCAAGAGCTACCTTGGTAGGCCTTGGAAGGAGTACTCAAGAACCATTGTCATGGAGTCCGAAATCGGTGACATAATTCACCCTGATGGATGGCTACCTTGGGCAGGAGATTTTGCTCTCAAGACATTGTATTATGCTGAGTTCAACAACACAGGACCTGGTGCAAGCACCAATGCCAGGGTCAATTGGGTTGGTCACAAACTCATTAACAAAGATGAGGCAGCCAAGTTTACTGTGGGATCTTTCTTGAATGGAACATGGATCAATGGTAGAGGTGTACCTGCTCAGATGGGTTTGTACAATCAATAA 1764 0.4053 MAFQDFAILSERRRNERKEKVRKRIILGVLSSILLVCVIGAATFVLVNKTDPDNNNNNNTHKKPPSTTTNAKVENYLKIVKTICNSVEYKTKCEGPLSKVVENDTKLAQPKELLRVSIKLAEQEINKAFNKTTSMKFESEMDKGAYEDCKQLMNDAREEIGFSISEVSKNDLKKLSTRTPELNNWLSAVISYHQTCIDGFPDGELKNELKNLLQDPQEFVSNSLAIVKELSYVLSTIQPSTVRHLLSAKSDGFPTWIGVEDRRMLKAADDKPTPNVTVAKDSSGNFKTISEALAAIPQTYTGRYVVYVKEGIYEELVTVTKKMQNLTIYGDGSQKSIITGSKNFADGVRTFQTASFVVLGDGFLGKAMGFRNTAGAEKHQAVAARVQADRAMFVNCRFEGYQDTLYAQTHRQFYRSCVIAGTIDFIFGDAASVFQNCIMQLRKPMSNQQNIVTAQGRYQKQETTGFVLQKCEIKADNTLVPEKDKIKSYLGRPWKEYSRTIVMESEIGDIIHPDGWLPWAGDFALKTLYYAEFNNTGPGASTNARVNWVGHKLINKDEAAKFTVGSFLNGTWINGRGVPAQMGLYNQ* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0951 587 SUPERFAMILY Pectin lyase-like 273 574 IPR011050 -
Lan3g0951 587 TIGRFAM PME_inhib: pectinesterase inhibitor domain 71 230 IPR006501 GO:0004857
Lan3g0951 587 Pfam Plant invertase/pectin methylesterase inhibitor 79 226 IPR006501 GO:0004857
Lan3g0951 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 230 IPR035513 -
Lan3g0951 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 231 IPR035513 -
Lan3g0951 587 MobiDBLite consensus disorder prediction 50 70 - -
Lan3g0951 587 Coils Coil 111 131 - -
Lan3g0951 587 PANTHER PECTINESTERASE 14 584 - -
Lan3g0951 587 Pfam Pectinesterase 275 570 IPR000070 GO:0030599|GO:0042545
Lan3g0951 587 PANTHER PECTINESTERASE 14 584 - -
Lan3g0951 587 Gene3D - 269 584 IPR012334 -
Lan3g0951 587 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Lan3g0951 587 CDD PMEI-like_3 82 231 - -
Lan3g0951 587 SMART PMEI_2 75 226 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0951 Lan-Chr3 20792276 20794868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0951 1 586 Carbohydrate Esterase AT2G26450 48.622 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0951 - - gmx:100784679 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0206 15 2222143 2224651 Lan3g0951 3 20792276 20794868 LSH
Lan14g0089 14 1205707 1208225 Lan3g0951 3 20792276 20794868 LSH
Lan12g0942 12 16304389 16306723 Lan3g0951 3 20792276 20794868 PCT
Lan3g0951 3 20792276 20794868 Lan12g0942 12 16304389 16306723 PCT