Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0944 ATGGAACAGTTGAAATTTGCTGCAGAATCTGTGGCCAAAGAGGACTCTCCTTTTAGGCACAAGCCAAAAATTAACAATGCATTAGAGTCGTCTACAAGTCCAAGAAGTAGAAAGGTATCAGCTAGATGGGATCCAGTTGAAGCATGCCGGCCTATGATTGATGAAGCGCCTGTATTTCATCCGACTATTGAGGAGTTTGAGGATACACTTGGTTACATAGCAAAGATACGGCCCCTAGCTGAACCCCATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGAATCCACCTTGCCCTCTTAAGGAGAAAGACATATGGGAAAATACTAAATTTCCTACCCGAATTCAGTATATTGATTTGCTTCAAAATAGGGAGCCCATGAGAAAGAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGCACTCCAAAATGGGCACATGTAGGAGACCTGCTAATTCAGGTTCTGAAGCTAATAATCCTGATCCCGATGAGAAGTTTGGATTCCAATCTGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGATAAGTTTTTTAAGGAATGCTACTTCCGGTTGAAAGAAACTAATGAAGATGGAAAACTTAGTGATAGTAACAGCCAGCTGAGATGGGAACCCTGTCAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGAAACCAACGGACGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAAGTGGTGCACTTGGAAGTGGTTTTCCGAAGGCATCTTCCTTAACTAAGAGTGATTCAGATCAGTATGCCCTATCTGGCTGGAATCTCAATAACTTCCCCCGACTCCCAGGTTCCGTACTAAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTAGTGCCATGGCTCTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCACCACCTCTATTCGCTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTACGGAGTGCCTGGAAGCCATGCTTCACCTTTTGAAGATGCAATGAGGAAGCACTTGCCTGATTTGTTTGAGGAAAATCCAAATCTACTCAATGAACTGGTTACTCAGTTATCTCCTTCAGTCCTTAAATCCGAGGGAGTACCTTTATATCGCACTGTACAGCATTCTGGGGAATTTGTTATTACATTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGATTCAACTGTGCCGAGGCAGTGAATGTGGCTCCTGTCGATTGGTTAATGCATGGGCAGAATGCCATTGAGCTTTACAGTCTGCAGTGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGATCGGCACAGGAAGCTGTACGAGCTCTTGCAGAGCTAGCTAATCTTGGAAATGAAACTCCAAAAATTTCAAAATGGAGAAGTGTCTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGGATAAAGATGGAAAAAGAGAGACTAGAGTGTCTTGCAACTGATATAAAGTTGCTGAAGATGGATAGTGACTTTGATTTGTACAAGGAAAGGGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTAGGTTGTGAGTGCTCTCCCGACAGATATTCTTGTCTTAAGCATTCAAATTTGTTTTGCTCATGTGGAATGGACAGAAGATCCGTTCTGCTTCGTTATACTACAGATGAACTAAATAAATTGGTTGAAGCATTAGAAGGACAATCAGTCGCTATTGAAGTTTGGGCAAATAAAAATCTTGGAATGGTTTGTTCTGATGGCAATAAGGTTTCCATATTTAAACAAGATTCGGAGAGAGATACATACAAGACCAAGAGTCGTGAAGATGGGGAAAGCTCAACTGGTTGTGCAGGAACCAAGGATGGTCATAATAACAATATTAATGATACAAAATTGGTCGTAGACAATGAAGATAACATGGATAAGGCTGGTTGTCTGGATTTGAATCTTGAAGTTATATCTGGTGAAAATGAAAATTACTCGATGCATATTTCTGATAGCCAACATAATATGGATGTTTTAATAGAGGAAAAAGTATGCCGTTCAGGGTCTGGAAAGGGACAAGGCAATATGGAACTTGGTGGTGAGGGTAACGTGTCACATCTGTATTCAGGTTCAAAGACAGATTTTTCATCATGTTCAAGGGATGTCCACAATTCTTGTACATTTGGTGGTGGAAAGTTTGGGTTGGATCTGCAAATGGATTCAAATTCAGTAAAGCAGCCGAACAATGTATTCAAGATGGAAGTCATAGACACCACAAATACAAATATAACTTCAACAGCCGAAAGCTACCTAATGCAAACGTTTGGTAATTCTGTCAAGCCTATAAGTTTGGGATCGGTTGTTTATGGAAAGCTATGGTCTAGTAGGCACACAATATATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAGCATTCTCGACCCTGCGAGAATCTCTGGATACATATCTGAAATCATTGATGCTGGATTTCTTGGACCTATTTTCAAGGTTACGATGGAAGAACATCCAGGCGAGACTTTCACAGATATCTCAGCAGATAAGTGCTGGGAATCAGTTCTAAAGAGAGTACATAACGAAATCATGAGGCGAAGGAGTCTAGGTGAACATGAACTCCCTCCCTTAGAGCTTCTGAAGAACATCAACGGTCTTCGAATGTTTGGCTTCCTTTCACCTTCCATTATCCAGGCCATTGAAGCTCAAGATCTCAGTCATCAGTGTGTAGAGTACTGGAATCACAAAGTTATCCCTCCATCATCATGCAGTGACATCGATAATAAGTTCACTCATTGTTCAAGTAACTCTCTTGGTAATGTCAATACCAAAGTTTTCGGTGTCAATTTGATCAAGCAGGAAGAAGATAGCATAAGAGGAAGTTGCCATTCCCTTGAGATGAAATCATTACTACAAGGATCCTTAAATCCTGATGAGTTAAGCATAATCCAAAAGTTATTCAACTCGGTGGAGAACGGCATTTATAGCACTAATGGAGGAGATCGGAAAGCTTGTAGATAA 3051 0.4113 MEQLKFAAESVAKEDSPFRHKPKINNALESSTSPRSRKVSARWDPVEACRPMIDEAPVFHPTIEEFEDTLGYIAKIRPLAEPHGICRIVPPACWNPPCPLKEKDIWENTKFPTRIQYIDLLQNREPMRKKSRGRKRKRRKHSKMGTCRRPANSGSEANNPDPDEKFGFQSGSDFTLKDFQQYDKFFKECYFRLKETNEDGKLSDSNSQLRWEPCQEEIEGEYWRIIEKPTDEVEVYYGADLESGALGSGFPKASSLTKSDSDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASPFEDAMRKHLPDLFEENPNLLNELVTQLSPSVLKSEGVPLYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAIELYSLQCRKTSLSHDKLLFGSAQEAVRALAELANLGNETPKISKWRSVCGKDGVLTKAVKTRIKMEKERLECLATDIKLLKMDSDFDLYKERECFSCFYDLHLSAVGCECSPDRYSCLKHSNLFCSCGMDRRSVLLRYTTDELNKLVEALEGQSVAIEVWANKNLGMVCSDGNKVSIFKQDSERDTYKTKSREDGESSTGCAGTKDGHNNNINDTKLVVDNEDNMDKAGCLDLNLEVISGENENYSMHISDSQHNMDVLIEEKVCRSGSGKGQGNMELGGEGNVSHLYSGSKTDFSSCSRDVHNSCTFGGGKFGLDLQMDSNSVKQPNNVFKMEVIDTTNTNITSTAESYLMQTFGNSVKPISLGSVVYGKLWSSRHTIYPKGFKSRVNFFSILDPARISGYISEIIDAGFLGPIFKVTMEEHPGETFTDISADKCWESVLKRVHNEIMRRRSLGEHELPPLELLKNINGLRMFGFLSPSIIQAIEAQDLSHQCVEYWNHKVIPPSSCSDIDNKFTHCSSNSLGNVNTKVFGVNLIKQEEDSIRGSCHSLEMKSLLQGSLNPDELSIIQKLFNSVENGIYSTNGGDRKACR* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0944 1016 MobiDBLite consensus disorder prediction 608 632 - -
Lan3g0944 1016 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Lan3g0944 1016 Pfam F/Y rich C-terminus 838 925 IPR003889 GO:0005634
Lan3g0944 1016 Pfam F/Y-rich N-terminus 787 831 IPR003888 GO:0005634
Lan3g0944 1016 Gene3D Cupin 41 413 - -
Lan3g0944 1016 SMART JmjN_1 55 96 IPR003349 -
Lan3g0944 1016 Pfam C5HC2 zinc finger 519 571 IPR004198 -
Lan3g0944 1016 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 629 999 - -
Lan3g0944 1016 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 637 - -
Lan3g0944 1016 SMART fyrn_3 790 834 IPR003888 GO:0005634
Lan3g0944 1016 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Lan3g0944 1016 MobiDBLite consensus disorder prediction 122 167 - -
Lan3g0944 1016 ProSiteProfiles FYR domain FYRC motif profile. 836 926 IPR003889 GO:0005634
Lan3g0944 1016 Pfam jmjN domain 57 90 IPR003349 -
Lan3g0944 1016 SUPERFAMILY Clavaminate synthase-like 264 451 - -
Lan3g0944 1016 SMART fyrc_3 840 932 IPR003889 GO:0005634
Lan3g0944 1016 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Lan3g0944 1016 MobiDBLite consensus disorder prediction 7 22 - -
Lan3g0944 1016 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 637 - -
Lan3g0944 1016 PANTHER LYSINE-SPECIFIC DEMETHYLASE 629 999 - -
Lan3g0944 1016 ProSiteProfiles FYR domain FYRN motif profile. 776 834 IPR003888 GO:0005634
Lan3g0944 1016 MobiDBLite consensus disorder prediction 128 146 - -
Lan3g0944 1016 SMART cupin_9 263 429 IPR003347 -
Lan3g0944 1016 MobiDBLite consensus disorder prediction 1 39 - -
Lan3g0944 1016 Gene3D - 781 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0944 Lan-Chr3 20634912 20643050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0944 734 961 JUMONJI Transcription Factor Family AT1G30810 44.541 5.36e-51 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan3g0944 JmjC 4.1e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0944 - - gmx:100801775 1480.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0067 14 962329 969656 Lan3g0944 3 20634912 20643050 LSH