Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0930 ATGGGGAAGAAAAAGAAGGTAGGACAAAAAAGTGATCAAAGCAAAGTTGGAGATAAAATCCCCAAAGCGTATCACAATGACAATGATACCTTGGTACTTATATCAATGTCTCAAGAGTTGAAGGATGAGGGGAACAAGCTGTTCCAAAAGCGGGATCTTGAAGGAGCATTGGTGAAATATGAGAAAGCCCTGAAATTGCTTCCAAATGATCATATAGATGTGTCCTATCTGCGGAGTAACATGGCCGCGTGCTACATGCAGATTGGACTCAGCGAGTTCCCGAGGGCAATTCATGAATGCAATTTGGCTCTTGAGGTAACACCAAAGTACAGTAAAGCTCTATTGAAGAGGGCAAGGTGCTATGATGGTTTGAATAGGTTAGAGTTAGCACTGAGAGATGTTAGTACTGTTTTGAAGATGGATCCACATAACATCATAGCGTTGGAGATCGCGGATAATGTCAAAAGGGCACTTGAAAAGAAAGGATTGATAGTAAATGATGCAGAAATCGAGTTGCCTCCAGATTATGTTGAACCTTTGTATGCTTTGCCTACGAAAATAGTAGTGAAAGAAAAGATACACAAGAAAAAGAGCAACAAAGAAAAGGTGAATTTTCCCATTAAAATTGTAGAAAAACTAGCCGAGGAGAAATTGCAAGAGCAGAAAAAGGAGGACGATGTTGTAGCAAAGATAGCTAACAAATCAAAGAAGGACATGGAAAAAATTGATAAGAATGATGATGTTAAGGAGGTTGTCAAGGAAAATTGTAACATTAAAAGTGAAGTTATACCTAAGAAAATGGCTAAACTTGTTTTTGGTGAGGATATAAGATGGGCTGAATTGCCAATCAACTGCAGCCTCTTTCAGCTAAGGGAAGTTATTTGTGACCGGTTCCGAAACCTTGGAGCAGTTCTTGTCAAATACAGAGACCTCGAAGGTGACTTGGTCACAATTACTTGTGATGAAGAATTAAGATGGGTTGAAACAGGATCACATGGTTCTATCCGGCTGCACATAATTGAAGCTAATCCTGATCAGGATCCATTCTTTGGGAAACTTACCGCAAAGGATGATAAAGAGATTGGTTCCGAGAATATTTGCATGATAAAAGCAAAGGAAATTATTAGCTCGTCTTGCGTCGAAGATTGGATAATTCAGTTTGCACAACTTTTCAAGAACCATGTTGGGTTTGAATCTGATAGATACTTGGATTTTCATGAACTTGGGATGGATTTCTATTCCGAGGCTATGGAGGAGACAGTTACAAGTGAAGAAGCACAGAGCCTATTCGACATCGCGGGAAGTAAGTTCCAGGAGATGACAGCTCTAGCTTTGTTCAACTGGGGTAATGTGCATATGTATAGGGCAAGAAAGAAAGTGTATTTGTCAGAAGATTCTTCAACAGAGCATATCCATGAAAAAATCAAAAGTTCATATGAATGTGCACAAAAAGAATATGCAAAAGCTGGTGAAAAATATGAAGCAGCTTTTAAAATTAAGTCAGATTTTTATGAAGGCTTCTTAGCACTCGGAGAGCAGCAGTTTGAGCAAGCAAAACATTCTTGGTATTATGCCCTCAGTAGTAATGTAGATTTAGCAACATGGCCCTCCGCTGAGGTTCTTCAGCTTTACAACAATGCCGAGAATAATATTGAGATAGGAATGCTGATATGGGAAGAATCAAAACAGCAGCACTCGAGTGGAATCTCTGATTCAAATGATATTAGATTACATTTGCAAAAGATGGAGTTGGATGAGGTACTTAAAAATATGCCATCAGAAGAAACCGATGCGCAGGCATCCGATATGAGGTCTCAAATAAATCTCCTTTGGGGTACCGTGCTATACGAACGCTCAATATTGGAATTCAAATTAGGACTACCAGTATGGCATGAATCTCTGGAAGTTGCGGTCGAGAAGTTTGAACATGCTGGAGCATCTCCAACAGATATTGCTGCAATGTTGAAAAACCACTGTTTGAATGACACTGCCTTACATAAATTAAAATTTGATGAAATAGGACAGTCATGGAATGAGATGTATGAAGCTAAAACATGGCGGAATGGAGTTCTATCGTTACGTTTGGAAGCCTTACTTAGAAGGAGAGCATCTAAAATTTATCATGCCTTGTAG 2133 0.3919 MGKKKKVGQKSDQSKVGDKIPKAYHNDNDTLVLISMSQELKDEGNKLFQKRDLEGALVKYEKALKLLPNDHIDVSYLRSNMAACYMQIGLSEFPRAIHECNLALEVTPKYSKALLKRARCYDGLNRLELALRDVSTVLKMDPHNIIALEIADNVKRALEKKGLIVNDAEIELPPDYVEPLYALPTKIVVKEKIHKKKSNKEKVNFPIKIVEKLAEEKLQEQKKEDDVVAKIANKSKKDMEKIDKNDDVKEVVKENCNIKSEVIPKKMAKLVFGEDIRWAELPINCSLFQLREVICDRFRNLGAVLVKYRDLEGDLVTITCDEELRWVETGSHGSIRLHIIEANPDQDPFFGKLTAKDDKEIGSENICMIKAKEIISSSCVEDWIIQFAQLFKNHVGFESDRYLDFHELGMDFYSEAMEETVTSEEAQSLFDIAGSKFQEMTALALFNWGNVHMYRARKKVYLSEDSSTEHIHEKIKSSYECAQKEYAKAGEKYEAAFKIKSDFYEGFLALGEQQFEQAKHSWYYALSSNVDLATWPSAEVLQLYNNAENNIEIGMLIWEESKQQHSSGISDSNDIRLHLQKMELDEVLKNMPSEETDAQASDMRSQINLLWGTVLYERSILEFKLGLPVWHESLEVAVEKFEHAGASPTDIAAMLKNHCLNDTALHKLKFDEIGQSWNEMYEAKTWRNGVLSLRLEALLRRRASKIYHAL* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0930 710 Gene3D Tetratricopeptide repeat domain 35 167 IPR011990 GO:0005515
Lan3g0930 710 Pfam PB1 domain 269 339 IPR000270 GO:0005515
Lan3g0930 710 SUPERFAMILY TPR-like 37 183 IPR011990 GO:0005515
Lan3g0930 710 MobiDBLite consensus disorder prediction 1 21 - -
Lan3g0930 710 PANTHER PROTEIN PHOX3 5 710 - -
Lan3g0930 710 ProSiteProfiles TPR repeat profile. 37 70 IPR019734 GO:0005515
Lan3g0930 710 PANTHER PROTEIN CLMP1 5 710 IPR044517 -
Lan3g0930 710 SMART tpr_5 75 110 IPR019734 GO:0005515
Lan3g0930 710 SMART tpr_5 37 70 IPR019734 GO:0005515
Lan3g0930 710 SMART tpr_5 111 144 IPR019734 GO:0005515
Lan3g0930 710 ProSiteProfiles TPR repeat profile. 111 144 IPR019734 GO:0005515
Lan3g0930 710 SMART PB1_new 265 342 IPR000270 GO:0005515
Lan3g0930 710 SUPERFAMILY CAD & PB1 domains 268 350 - -
Lan3g0930 710 CDD PB1 273 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0930 Lan-Chr3 20393460 20398135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0930 27 144 Calmodulin-binding Proteins AT3G25230 31.061 1.66e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0930 - - gmx:100820306 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0248 15 2800523 2804669 Lan3g0930 3 20393460 20398135 LSH
Lan1g1155 1 21563504 21567954 Lan3g0930 3 20393460 20398135 PCT
Lan1g0270 1 1984507 1987826 Lan3g0930 3 20393460 20398135 PCT
Lan3g0930 3 20393460 20398135 Lan1g1155 1 21563504 21567954 PCT
Lan3g0930 3 20393460 20398135 Lan1g0270 1 1984507 1987826 PCT