Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0907 ATGACTATGGACGATGAATGCTCTATATACGTTGGGGGTATACCCTACGACATAACCGAAGATACAATTCGCACTATCTTTAATTTGTATGGTGCTATTCTTGATGTCAAGATTATCAATGATCAACGCACTGCGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCCATCGATGCAATTAATGACATGAATGGCAGAAGCATTGGTGGGCGCGCGGTTATGGTTAATGGGGTGAAGACTCGTGGTGGTAGATCGGGTTTCAGTAGAGAACATCAACGTAGAAATATGGAAAGGAATGACGATTGGGATCATGGCAGAGGCCGAGACCAAGATTATGATCATGATAGAGTCATATTCAGGGATCGACACAGTCATAGGTCTCAAGAGCGTGATAGGTCTCAAGAGCGTGATAGGTCTCAGGAGCGTGATAGGTCTCGAGACCATGACCGTGGCAGAGATAGAGGATTTGAACATATGCATAATTATGGTCATGAGAAAGAACCTTTTGTAGATAAAGATCGTAGTCGAGACAAAGATGGTTTGGATAACAAACATGAACACAACAAGGCACATGGTCAAGAGAAGGAAGGAGAACATAACTTAGATTTTGATAAATGGAGTAAGATAGATTGGACCTCTGATCATGACAGAAGTTTTGGTGAGGACCAAACTAAACATTCAAGAAGATCCAGCGGTTGGTATGTTACACATCAACATAGCATGGATCATTTATCAGATTCAAATGGCAATCACGATGATCAGGTGATTTTAACATTTGTTGAAGATCAATTGAAGCGTTCAACTCAAAGGCTTGATCAACTGAAAAATGAGGTTTCTCAGATGGAAGAGAAATTGGAAGAGAAACGACTTCTTACTCTGGAGTTACAAAAGAAGTCTAGGAAACTCGAGGATACACTGATCAGTGTAAAGAAACAAAGCTCATATCGTCAGATGCAGTTGATCAAGCTGCACAAATGTGTTCTGCAAGTGAAAGATTACTCTGAAAGACTTAAAGCCTCTGAAAAAGAACTCCAGGCTCTAGTTGATATGACACTGTTAGAGAATGAAGATGTCACTGGCTAA 1095 0.4064 MTMDDECSIYVGGIPYDITEDTIRTIFNLYGAILDVKIINDQRTAGKCYCFVTFTNPRSAIDAINDMNGRSIGGRAVMVNGVKTRGGRSGFSREHQRRNMERNDDWDHGRGRDQDYDHDRVIFRDRHSHRSQERDRSQERDRSQERDRSRDHDRGRDRGFEHMHNYGHEKEPFVDKDRSRDKDGLDNKHEHNKAHGQEKEGEHNLDFDKWSKIDWTSDHDRSFGEDQTKHSRRSSGWYVTHQHSMDHLSDSNGNHDDQVILTFVEDQLKRSTQRLDQLKNEVSQMEEKLEEKRLLTLELQKKSRKLEDTLISVKKQSSYRQMQLIKLHKCVLQVKDYSERLKASEKELQALVDMTLLENEDVTG* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0907 364 Coils Coil 261 305 - -
Lan3g0907 364 Gene3D - 2 120 IPR012677 -
Lan3g0907 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Lan3g0907 364 MobiDBLite consensus disorder prediction 88 205 - -
Lan3g0907 364 CDD RRM_SF 9 80 - -
Lan3g0907 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Lan3g0907 364 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Lan3g0907 364 SMART rrm1_1 8 80 IPR000504 GO:0003723
Lan3g0907 364 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 140 - -
Lan3g0907 364 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 142 362 - -
Lan3g0907 364 Coils Coil 334 354 - -
Lan3g0907 364 MobiDBLite consensus disorder prediction 81 205 - -
Lan3g0907 364 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 142 362 - -
Lan3g0907 364 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0907 Lan-Chr3 18561057 18565113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0907 9 73 Eukaryotic Initiation Factors Gene Family AT1G71770 35.385 2.69e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0907 - - vun:114179118 410.223