Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0898 ATGCCAAATATCGAGGAGAAAAAGCTCAAACGCAAGATGGATGATGAACCGATTGTGGATGATGCTGATCCCCAGCCTTTAGAGGCTTTGAGGATCGGTAGTAATTCTATAGTCGATGAATCAACATCTAGGCCTTTTAAATCAACGAGAACTTCCATTGAGTGTGATTCTTTAGTGAAATCCTCTGAGCCCTCCAATGATAGAGAAATCAAGGAAAATATACCACTAGATCATTCTTGTCCATATTGTGATAGAAAATTCTCAAGCCCCCAAGCACTTGGGGGTCACCAAAATGCTCACAAGCATGAGCGTTTACTTGAAAAAGAGAAGAACAAATACATGTATGGTGATGAGTTTGGTTCCCGCTATTCAAGACATGAATATTCATATTTGACAAACTATTACCAAGGTTCTTCACCTTTGAACCTTTATCATGGTGTGCATTTGCAGCGCCCCATGGCTCAGATTCCAAGCATGTCAAGTCCTAGGCTTTCATCCATTGCTTATGGTCATCACCAAGGGTTACACTTTCCAAGCACATCCTTCAATGCACACCCATTTGGGAGTACTAGTTCTTGGACCGATCGTGGTGGTGGTGGTGCAATTCCGTCAAGGTCAAACTTCCAGGGTTTGAATCTGTTTGGTCCAATGAATCAGACTTCTCTACCTATTATCAATGAGGCTAATCAAATTCAAGCCCATGCTGGTGTTAGAAACTATCTTGAAGATCTTAGGGTTTCTCCTGCTGCATCTCAAGCCTCAGCTGAAGATCCTCAAGCCTCAGAGGAGTTGGATTTGAGTCTCAGACTTAGCTTTCCCTAG 822 0.4258 MPNIEEKKLKRKMDDEPIVDDADPQPLEALRIGSNSIVDESTSRPFKSTRTSIECDSLVKSSEPSNDREIKENIPLDHSCPYCDRKFSSPQALGGHQNAHKHERLLEKEKNKYMYGDEFGSRYSRHEYSYLTNYYQGSSPLNLYHGVHLQRPMAQIPSMSSPRLSSIAYGHHQGLHFPSTSFNAHPFGSTSSWTDRGGGGAIPSRSNFQGLNLFGPMNQTSLPIINEANQIQAHAGVRNYLEDLRVSPAASQASAEDPQASEELDLSLRLSFP* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0898 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Lan3g0898 273 MobiDBLite consensus disorder prediction 1 19 - -
Lan3g0898 273 ProSitePatterns Zinc finger C2H2 type domain signature. 80 102 IPR013087 -
Lan3g0898 273 Pfam C2H2-type zinc finger 78 101 - -
Lan3g0898 273 Gene3D Classic Zinc Finger 69 127 - -
Lan3g0898 273 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 59 270 IPR044246 GO:0009788
Lan3g0898 273 MobiDBLite consensus disorder prediction 249 273 - -
Lan3g0898 273 MobiDBLite consensus disorder prediction 1 22 - -
Lan3g0898 273 SUPERFAMILY beta-beta-alpha zinc fingers 78 113 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0898 Lan-Chr3 17953186 17954007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0898 79 203 C2H2 Transcription Factor Family AT5G10970 34.507 7.85e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0898 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0898 - - lang:109342396 560.836