Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0897 ATGTCAATGGAGGACAAAAAGATGAAGCGCAAGATGAATGAGGCACCAACTTCGGGTGTTGCTGAATCAAAACGTTCACAGTGTCTCAGACTTGGTAGCAACCCTGTGGTTGGTGAATCATCATCATGGAAGTCTTCAAAGAAAGCCTATGAGCCCTCCAATGATAGAGATGATCCTAAAGAAGATCCACCACTTAAGTATGTTTGTCAATATTGTGATAGAAAATTTTCAAGCTCCCAAGCACTTGGGGGGCATCAAAATGCTCATAAGCATGAGCATGAACGCCAGTTGAAAAAAGAAAAGGAGAAATTATTACATGGTCTGCAGTCCGATACTAGTTTTTCGACTCGTCCATATCCGAGCATGGTAAACAACTACCAACATTCACCCTCACACCTTTACTATGGGGTGCGATTTCAGCGCCCCATGGCTCAAATTCCTAGCATGTCTTTACCCTACCACTCATCCATTGGCTATGGTCACTACCAAGGGCCACATGTCCCAAACCCATCCCTCCATGGACACCAATTTATGAACGTTAGTAGTTCTTTGGGTCATGGTGCAATTCCACCAAGATACAATAACCTCCAAGGTTTGACACATTTTCAAGGTCAACCTCATTCTGGTGTTGGAAACCCTCTTGAAAATCCTAGTGCACCTCAGGCCTCAGAGGACATAGATTTAACTCTCAAGCTTTGA 699 0.4378 MSMEDKKMKRKMNEAPTSGVAESKRSQCLRLGSNPVVGESSSWKSSKKAYEPSNDRDDPKEDPPLKYVCQYCDRKFSSSQALGGHQNAHKHEHERQLKKEKEKLLHGLQSDTSFSTRPYPSMVNNYQHSPSHLYYGVRFQRPMAQIPSMSLPYHSSIGYGHYQGPHVPNPSLHGHQFMNVSSSLGHGAIPPRYNNLQGLTHFQGQPHSGVGNPLENPSAPQASEDIDLTLKL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0897 232 Pfam C2H2-type zinc finger 67 90 - -
Lan3g0897 232 Gene3D Classic Zinc Finger 40 118 - -
Lan3g0897 232 MobiDBLite consensus disorder prediction 189 232 - -
Lan3g0897 232 MobiDBLite consensus disorder prediction 49 63 - -
Lan3g0897 232 PANTHER ZINC FINGER PROTEIN JAGGED 42 232 IPR045320 GO:0003700
Lan3g0897 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Lan3g0897 232 MobiDBLite consensus disorder prediction 196 223 - -
Lan3g0897 232 MobiDBLite consensus disorder prediction 80 99 - -
Lan3g0897 232 MobiDBLite consensus disorder prediction 19 48 - -
Lan3g0897 232 MobiDBLite consensus disorder prediction 1 63 - -
Lan3g0897 232 PANTHER OS02G0182300 PROTEIN 42 232 - -
Lan3g0897 232 SUPERFAMILY beta-beta-alpha zinc fingers 58 100 IPR036236 -
Lan3g0897 232 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0897 Lan-Chr3 17865726 17866535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0897 62 120 C2H2 Transcription Factor Family AT5G57520 52.542 3.63e-10 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0897 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0897 - - lang:109358021 186.422