Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0881 ATGGCTGGAATGCTTCCAGGAGTTGAATCTGCAAGAAGAAGGAAGTTCCATCATAGTGGAGGATGCATGGATTCACCTTCTTTTTCTACAAATAATTCCACAAGACGTTCTTCTTTTTGTTTATATGCAAGCAACCATGAATCCTTTATTTCCTCATCTTCTTCATTGCAGAGAAACATGATTTACCAGACATACCCAGATGGAAATATGGTAGGAGCAGCCAGAGAAGCTAAACAAAGATTGGATGAAAAGTTCAAAGCACATAAGAAATCAGAAAACAAAAGTGAAAACAACTTAAATTGTGTGGAGGGAAGAAGGACAAACCAACCAGACTTGCACATTTATGGGTCAAAGAAAAGTTGTTTAAGGAAATTCAGTTGGACCAAATTGAGTTGGAAGGCCACAGAACAAGAAGATTGTGCTGTGTGCTTGGAATCACTCAAAGATGGAGAGACATTGATTCATCTTTCTTGCCAACATAGGTTCCATTCTAGATGCTTGAAACCATGGTTAGATAAAAATTCTCATTGTCCATGTTGTAGAACTACCATTATTTCCACCTAG 564 0.3794 MAGMLPGVESARRRKFHHSGGCMDSPSFSTNNSTRRSSFCLYASNHESFISSSSSLQRNMIYQTYPDGNMVGAAREAKQRLDEKFKAHKKSENKSENNLNCVEGRRTNQPDLHIYGSKKSCLRKFSWTKLSWKATEQEDCAVCLESLKDGETLIHLSCQHRFHSRCLKPWLDKNSHCPCCRTTIIST* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0881 187 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lan3g0881 187 Coils Coil 74 94 - -
Lan3g0881 187 SMART ring_2 140 180 IPR001841 -
Lan3g0881 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 185 IPR013083 -
Lan3g0881 187 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 93 - -
Lan3g0881 187 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 117 183 - -
Lan3g0881 187 MobiDBLite consensus disorder prediction 1 33 - -
Lan3g0881 187 CDD RING-H2_PA-TM-RING 139 181 - -
Lan3g0881 187 SUPERFAMILY RING/U-box 128 185 - -
Lan3g0881 187 Pfam Ring finger domain 139 181 IPR001841 -
Lan3g0881 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 117 183 - -
Lan3g0881 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0881 Lan-Chr3 17408058 17409674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0881 1 86 C3H Transcription Factor Family AT2G15580 45.000 3.60e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0881 - - gmx:100527583 248.054