Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0878 ATGGATATTGAGGAGGAGATCCGTTCCTTACAGCTCGACTCAGCAGATCCAAAGCAGGATGTTCAACCACAGCCTGTCCATGCTGATGAGCCAAAAGTGAAAGATAAGGAAACTCCTCATGTGCAAGATGAAAAAGATGATCTGGAGATGAAGAAAAGACATGTGAATGTTGTATTCATTGGCCATGTCGATGCTGGCAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAGCGAACTATCCAAAAATATGAGAAAGAAGCCAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAAGAAGAGAGGGCAAAGGGGAAAACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGAAAACAAGGTTCACAATTTTGGATGCTCCTGGTCACAAAAGCTATGTTCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTATTGGTAATTTCTGCTCGGAAGGGAGAATTTGAAACTGGATATGAGAAGGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGTTGGGTGTGGCTAAGTTACTTGTTGTTGTTAATAAAATGGATGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATTCTGAAATTGAGTCAAAGATGATTCCATTTCTGAAGCAATCAGGATACAATGTGAAGAAAGATGTCCAGTTTTTACCAATATCTGGATTGAATGGTGCGAACCTACAAACTAGACTGGATAAAAGCATTTGTCCATGGTGGGACGGTCCTTGCTTATTTGAAGCCCTTGATTCTGTTGAACTTCCAGAGCGAGATCCTACAGCTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTGTTCGTGAGGGGGATTCTTTGTGGGTCATGCCAAACAAGCATCCTGTAAAAGTTGTTGCTATATTTATTGATGAAGATCGGGTTAAACGTGCTGGCCCTGGAGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTATCTGGGTTTGTCCTGTCTTGTATTGAAAGTCCAATACCAGCTGTTACCGAGTTTGTTGCTCAGTTGCAGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGATACAAGGCTATTCTGCACATCCACTCGATAGTTGAAGAATGTGAGATTGTTGAGCTCTTGCATCAAATTGATCCAAAGACAAGGAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAGTGGTGCTGGTATTGTCTGCCGTGTTCAGGTTATCAACACAATATGCATTGAGACATTCTCTTGTTTTCCACAACTTGGGAGGTTTACTCTTCGCACTGAAGGGAAAACTGTTGCAGTGGGAAAAGTTACTAAAATCTGA 1437 0.412 MDIEEEIRSLQLDSADPKQDVQPQPVHADEPKVKDKETPHVQDEKDDLEMKKRHVNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYSEIESKMIPFLKQSGYNVKKDVQFLPISGLNGANLQTRLDKSICPWWDGPCLFEALDSVELPERDPTAPFRMPIIDKFKDMGTVVMGKVESGTVREGDSLWVMPNKHPVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDILSGFVLSCIESPIPAVTEFVAQLQILELLDNAIFTAGYKAILHIHSIVEECEIVELLHQIDPKTRKPMKKKVLFVKSGAGIVCRVQVINTICIETFSCFPQLGRFTLRTEGKTVAVGKVTKI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0878 478 CDD eRF3_C_III 370 478 - -
Lan3g0878 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 287 IPR027417 -
Lan3g0878 478 Pfam Elongation factor Tu C-terminal domain 369 478 IPR004160 -
Lan3g0878 478 MobiDBLite consensus disorder prediction 23 48 - -
Lan3g0878 478 CDD eRF3_II 283 362 - -
Lan3g0878 478 MobiDBLite consensus disorder prediction 1 48 - -
Lan3g0878 478 PANTHER BNAA06G12300D PROTEIN 43 472 - -
Lan3g0878 478 PANTHER TRANSLATION FACTOR 43 472 - -
Lan3g0878 478 Pfam Elongation factor Tu GTP binding domain 52 254 IPR000795 GO:0003924|GO:0005525
Lan3g0878 478 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 372 478 IPR009001 -
Lan3g0878 478 Pfam Elongation factor Tu domain 2 296 362 IPR004161 GO:0005525
Lan3g0878 478 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 52 281 IPR000795 GO:0003924|GO:0005525
Lan3g0878 478 SUPERFAMILY Translation proteins 275 368 IPR009000 -
Lan3g0878 478 CDD EF1_alpha 56 277 - -
Lan3g0878 478 Gene3D Translation factors 281 365 - -
Lan3g0878 478 Gene3D Translation factors 371 478 - -
Lan3g0878 478 PRINTS GTP-binding elongation factor signature 56 69 IPR000795 GO:0003924|GO:0005525
Lan3g0878 478 PRINTS GTP-binding elongation factor signature 115 123 IPR000795 GO:0003924|GO:0005525
Lan3g0878 478 PRINTS GTP-binding elongation factor signature 135 145 IPR000795 GO:0003924|GO:0005525
Lan3g0878 478 PRINTS GTP-binding elongation factor signature 151 162 IPR000795 GO:0003924|GO:0005525
Lan3g0878 478 PRINTS GTP-binding elongation factor signature 195 204 IPR000795 GO:0003924|GO:0005525
Lan3g0878 478 Gene3D - 33 277 IPR027417 -
Lan3g0878 478 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0878 Lan-Chr3 17266644 17274752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0878 52 478 Eukaryotic Initiation Factors Gene Family AT5G60390 37.182 1.68e-95 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0878 K03267 - gmx:100784412 830.476