Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0877 ATGGCAGACCAAGGTCCATCCAAAAAAATAGCTGATAGATATCTAAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTCGTATACAAAGCCATTGATACCCACACGGGGCAAACAGTTGCAATTAAGAAAATTCGGATTGGCAAGCAAAAAGAGGGGGTAAATTTCACGGCTCTTAGAGAAGTTAAAATGCTTAAAGAGCTCAAAGATCAGAACATTATTGAGTTGATTGATACATTCCTACATAAAGGGAATTTGCATCTTGTGTTTGAGTTCATGGAGACAGACCTTGAAGCTGTCATTAAAGACCGAAATATCTTTCTTTCACCGGCTGATACGAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTAATAGGACCTAATGGACAGTTGAAACTTGGAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCTCCTGAGCTTTTATTTGGTTCCAAGCAATATGGTTCAGGGGTAGATGTTTGGGCTTCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTTCTTCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTTCAGCATTTGGAACTCCAGCTCCTTCTCAGTGGCCTGATATTATATACCTTCCTGATTATGTCGAATACCAATATGTTCCTGCCCCTCCTCTGCGTTCATTATTTTCAATGGCAAGTGATGATGCTTTAGATCTGTTGTCAAAGATGTTCACATACGATCCGAAAGCTAGAATTTCAGTGCAGCAGGCACTAAAGCACAGGTACTTTTTTTCTGCACCACTGCCTACAGTTCCACACAAGCTCCCTAGACCTTCCCCCAAGAGGGAATCTGGGGTTTCGGAGGAGGGTCCTAATGTAGTATCACCTCCAAGAAAGTGTAGGAAAGTGATGCCAGGATGTGATGGGTTTGAAGGAAATTCTTTACCAGAAGGTAAGGCTGATGGCAATTTTGGTGATAATACAGGCAAGAATGAACCGGCTCCAATCTCGGGAGATTTTTCTATATTCGGATTACAACCTCCAAATAGCTCTACAATTAACAGGTCACGTCTGAAAAGAAAATTAGATATAGAATTCCAAAAGCCAGAAATGCAGTGA 1212 0.4101 MADQGPSKKIADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRIGKQKEGVNFTALREVKMLKELKDQNIIELIDTFLHKGNLHLVFEFMETDLEAVIKDRNIFLSPADTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGPNGQLKLGDFGLARIFGSPDRRFTHQVFARWYRAPELLFGSKQYGSGVDVWASACIFAELLLRRPFLQGSSDIDQLGKIFSAFGTPAPSQWPDIIYLPDYVEYQYVPAPPLRSLFSMASDDALDLLSKMFTYDPKARISVQQALKHRYFFSAPLPTVPHKLPRPSPKRESGVSEEGPNVVSPPRKCRKVMPGCDGFEGNSLPEGKADGNFGDNTGKNEPAPISGDFSIFGLQPPNSSTINRSRLKRKLDIEFQKPEMQ* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0877 403 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0877 403 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0877 403 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lan3g0877 403 MobiDBLite consensus disorder prediction 304 331 - -
Lan3g0877 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lan3g0877 403 ProSitePatterns Protein kinases ATP-binding region signature. 20 49 IPR017441 GO:0005524
Lan3g0877 403 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Lan3g0877 403 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0877 403 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Lan3g0877 403 MobiDBLite consensus disorder prediction 343 384 - -
Lan3g0877 403 PANTHER CELL DIVISION PROTEIN KINASE 9 348 - -
Lan3g0877 403 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lan3g0877 403 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0877 Lan-Chr3 17237621 17242140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0877 8 398 Core Cell Cycle Gene Families AT1G18040 72.040 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lan3g0877 Pkinase 9.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0877 K02202 - gmx:100776618 692.575