Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0850 ATGGCTCCAAAAAGAGGTGCTAAAGCTCCCATTGTAGCTGCAAAGAAGAAGCAGGATAATAAGGTTGTGAATCCATTGTTTGAGAAGCGTCCTAAGCAATTTGGGATTGGAGGAGCATTACCTCCTAAGAGGGATTTGACTCGCTTTGTGAAATGGCCTAAGACAGTTCAAATTCAAAGGAAGAAGAGAATTCTCAAGCAAAGGTTGAAGGTTCCACCAGCATTAAACCAATTCACTAAAACACTTGATAAAAACCTTGCAACCAACCTTTTCAAGGTGCTCCTCAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAAGAGCGTCTTTTGAAAAGGGCTCAGGCAGAGGCTGATGGAAAACCGGTTGAAGGAAAGAAGCCTATTGTTGTGAAATATGGACTCAATCATGTTACCTACCTTATTGAGCAGGTCGGTGTTCCTTTATTATTGATGCACGAATACGAATACCCTCCCCATCCTTGTTTAGTAATTTCTGACTTCGATACCTTTTTTATTTTCTGGCAGAACAAAGCACAGCTTGTTGTGATTGCTCATGATGTGGACCCAATTGAGCTTGTAGTATGGCTTCCAGCATTGTGCAGGAAGATGGAGATTCCATACTGTATTGTCAAGGGCAAAGCACGCTTGGGAACAGTTGTCCATAAGAAAACTGCATCAGTTTTGTGTTTGACAACTGTCAAGAATGAAGACAAGTTAGAGTTCAGTAGAATCTTGGAGGCTATCAAGGCTAACTTCAATGACAAGTATGATGAATACAGAAAGAAGTGGGGTGGTGGAATTATGGGTTCCAAATCCCAAGCCAAAACCAAGGCCAAGGAAAGGCTCATTGCCAAGGAAGCAGCTCAAAGATTGACCTAG 879 0.4209 MAPKRGAKAPIVAAKKKQDNKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKVLLKYRPEDKAEKKERLLKRAQAEADGKPVEGKKPIVVKYGLNHVTYLIEQVGVPLLLMHEYEYPPHPCLVISDFDTFFIFWQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRLT* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0850 292 PRINTS Ribosomal protein L7A family signature 31 48 IPR001921 -
Lan3g0850 292 PRINTS Ribosomal protein L7A family signature 48 65 IPR001921 -
Lan3g0850 292 PRINTS Ribosomal protein L7A family signature 68 87 IPR001921 -
Lan3g0850 292 PRINTS Ribosomal protein L7A family signature 92 105 IPR001921 -
Lan3g0850 292 PRINTS Ribosomal protein L7A family signature 126 146 IPR001921 -
Lan3g0850 292 Gene3D - 52 267 IPR029064 -
Lan3g0850 292 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 172 290 - -
Lan3g0850 292 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 144 - -
Lan3g0850 292 SUPERFAMILY L30e-like 92 257 IPR029064 -
Lan3g0850 292 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 175 239 IPR004038 -
Lan3g0850 292 ProSitePatterns Ribosomal protein L7Ae signature. 200 217 IPR004037 GO:0042254|GO:1990904
Lan3g0850 292 PANTHER BNAA03G47020D PROTEIN 2 144 - -
Lan3g0850 292 PANTHER BNAA03G47020D PROTEIN 172 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0850 Lan-Chr3 16210151 16213643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0850 1 292 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 75.685 1.99e-157 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0850 K02936 - gmx:100819609 466.848