Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0829 ATGGGTCGCAAGAAGATTGAGATTAAGATGTTGGAGGACTCTAACACAAGGCAAGTTACATTTTCCAAGCGTAAAACAGGCTTATTCAAGAAAGCAAATGAGTTATCTGTCTTGTATGGATGTGAAGTTGCTGTTATTGTGTTTTCTCCTGGGAAGAAACCCTATTCTTTTGGGCACCCAGATATTAGTACTGTTGCTACCAAATTTCTTCAACAAGAGTCAAACTCAAATAGTGCCCAATGTAGCTCATCTTCCAATGATCATAACTTGGTCAGGTTGAACCAACTTGCTGCAGTGATGGACGAATTATATGAGGAAGAAAAGAGAGGTGAGATTCTTGATGTGGCCCTATATCAACACAAGAAAACTCAACTTGACAAGGTAAAAGATTTGCATCATTTAGAAAAGTTAAGGTGTAAAATAAAGGCACGTATTGATGAGATTGAGGTAGCGGAAACTATGTTAAAGATTAAAGAGCAACCTGTGTTTCTTATAGTTGTAGAAGGTCTCACCGGGTTGATGAAATCAGCGGTTTCAAATCATAAGTTCAAAGAATACGAGGTTGGTAGGGAGAAGGTTGGGGTTAATTTGCTCCAATATGCTGATAATGCAGTTATTATTAGGAAACTTTCCGCAAAGAATGTGATTGCTATGAAGTATATTCTTCATCTTTTTGAAGTCTCTTCTAGTCTGACAGTTAATTTTAGTAAGTGCAGTTTGTCTCGTGTCAACATTTCTTCAGGTTTTGTAGATGGTATGGCAGAGTATTTAAATTGTAAAAGGGGTCTTGGCCTATGA 798 0.3747 MGRKKIEIKMLEDSNTRQVTFSKRKTGLFKKANELSVLYGCEVAVIVFSPGKKPYSFGHPDISTVATKFLQQESNSNSAQCSSSSNDHNLVRLNQLAAVMDELYEEEKRGEILDVALYQHKKTQLDKVKDLHHLEKLRCKIKARIDEIEVAETMLKIKEQPVFLIVVEGLTGLMKSAVSNHKFKEYEVGREKVGVNLLQYADNAVIIRKLSAKNVIAMKYILHLFEVSSSLTVNFSKCSLSRVNISSGFVDGMAEYLNCKRGLGL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0829 265 PANTHER MADS BOX PROTEIN 2 164 - -
Lan3g0829 265 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Lan3g0829 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Lan3g0829 265 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan3g0829 265 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Lan3g0829 265 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan3g0829 265 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 164 - -
Lan3g0829 265 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan3g0829 265 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan3g0829 265 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0829 Lan-Chr3 15708943 15711551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0829 1 111 Type I MADS-box Gene Family AT2G34440 47.788 9.69e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan3g0829 SRF-TF 8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0829 - - lang:109342374 507.294