Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0820 ATGATTATCAAGCGGAATTTGAAATCCCAAATGCCAATTGTGAAAAGGTGCAAACTCATTGACCCGGTTGGTGAAAAGGATGAGTGTTTTTATGCTCGTAAGAAGAGGAAGAAGATGAGTAGCGATTACTACCCTTTGAACCTTCTCGGCGACATCGCCTCCGGTGCAATTTCGGTGAGCTTTCACGGCCTGCTGACCGAGAAAGGGTTCTCTGCTTCGTGGTGCACTGAAGTTTCGTGCTCCCCGCCCTGTGAAGTGGAATCGAATTCGAACGGTGGTGGCAGTGGTGGTGGTGCTACAAAGAACCAGGGTGGCGAGGTTCAGCGGCCGCCGCTAGTTAGGACCTCAAGAGGGAGGGTTCAGGTGCTGCCATCACGGTTCAATGATTCTATTATTGATAATTGGAGAAAGGACAGCAAGAGCAGCGTGCATGATTGTGAAATTGATGACGATTTTGAACCCAAGAGAGTGAAATTCGGTTCCAAAGCACAGAAAAATTGCAATCAGAATGCGAAAAAAGGGCCAAAGGATGAGAAAATCAGTTGCAAGCCTCAAAAGTATCCAACATTGTGTGGGGGGAAGGCAAGGAAGGATGTTGGTACGAGGTTTAGGAGTTTTGATGTGAGAGAGAGGTTTTTGGAGATGGAAGGAGTTGAGTCAATGGGAAACAAGAGAGCTTCGAAGGAGAATCGGGAGAGGAAAGATGGGTTATATGGGCCTGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCAAGGAGAAGGGAACCTTTTTGGCCAGCCATTGTGATTGATCCTATGTCTCAGGCACCTGAACTAGTCATAAGGTCTTGTGTAGCTGATGCAGCTTGTGTGATGTTTCTCGGGTTTGCGGGGAATAAAAATCAAAGAGACTATGGATGGGTGAGGGATGGGATGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAGGAGCAATCTGAGTTAAGTTACTATAACCCCTCTCAATTCCAAGTGGCAATGGAAGAGGCATATTTGGCCGACCAAGGCCACACAGAGAAGTTGATAGCAGATATAAATTCAGCAGCTGCTAACACTGATATTGATGACACTATTCTGAAAGTCCTTCAGGAGGACACTGGTCCAAACCGGTATGCAAGATATCACTATGTGAACCAGGATTTATTTGATAAGGACACACGACCATGTGAAGCCTGTGGGTTGGCTCTTAATTTCAAAATGTCCAAGAAAATAAAGGATTCAACTCCTGGTGGCCAATTCCTATGTAAAACATGTGCCAGGTTAACAAAATCAAATCATTATTGTGGCATATGCAAGAAAGTATGGAATCATTCAGATAGCGGCAGCTGGGTGCGCTGCGATGTGTGTAAAATCTGGGTGCACGCAGAATGTGACAAAATTTCCAGGAGCATTTTCAAGAACCTTGAAGGCACTGAATATTTCTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATTACGGTCAAAAGCCAAGTGTAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAAGGTCATTGTTCTCTGCAATGGTGTAGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGACTTTTGTGGGAATGAAAAGCAAGCACTTAGCGATTGGGAAAAACACACAGGTTCCAAATTAAGGAATTGGAAGACAAGCATTAGGGTGAAGGACTCCATGCTACCATTGGAACAATGGATGCTGCAGTTGGCAGAATCTCATGCTAAGGCTGTAGTTACTACCAAACCCAAAAAACCTTCTCTAAAAGAAAGGAAGCAGAAGTTGCTTACTTTCTTGCGAGAGAGATATGAACCTGTTCATGCTAAGTGGACTACAGAACGTTGTGCTGTATGTAGATGGGTTGAAGACTGGGATTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTAAAGACTTTACATCTTGGGTTTGCAAGGCTTGTGAAACACCTCACATCAAGCGGGAGTGTTGTCTTTGTCCTGTGAAAGGTGGTGCACTAAAACCAACTGATATTGACCCATTATGGGTTCATGTCACGTGTGCTTGGTTTCGACCTGAAGTCTCTTTTCCTAGTGGTGAGAAGATGGAGCCTGCTTTGGGTATTCTCAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATCTGCAAACAAATCCATGGTTCATGTACACAATGTTGCAAGTGTTCGACTTATTTTCATACCATGTGTGCATCGAGAGCTGGATATCGGATGGAGATGCATTGTTCAGAGAAAAATGGTAGGCAAACAACAAAATGGGTTTCTTATTGTGCTTATCACAGGGCTCCCAATCCCGACAATGTCTTGATTATGCAAACCCCTAATGGGGTCATTTCAACTAAAAGCCTTCTTAAAAATAAGAAAAAGGCTAGATCAAGGCTGATTGCATCAAATATAATGAAACAAGATGATACTCCTCTTGTTGATAATGCTGAGGATGAGCCATTCACTGCTGCTAGGTGCCGTATTTTCCGGAGAACAAATCATACGAAAAAGAGAGAAGCAGATGAAGCTATTTTTCATCAAGTGAGGGGTCCCTACCATCATCCTTTAGATGCAATACAGAGATTAAACAAATACAGACATGTTGTAGAGGAACCCGAGGCATTTTCTTCTTTCAGAGAGCGCCTTCGTCACTTACAGAAAACCGAAAACGAACGTGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTAGAGATATTCAAGAAGGAGATATGGTTCTTGAATATCGTGGTGAACAAGTGAGGAGTAGCATTGCAGATCTGCGGGAAGCACGCTATAGATTAGAAGGCAAAGACTGCTATCTATTTAAGATAAGTGAAGAAGTGGTGGTAGATGCTACTGATAAAGGAAATATAGCGCGGCTGATTAATCATTCTTGCATGCCAAATTGCTATGCACGGATCATGAGTGTGGGTGACGATGAGAGCCGGATTGTTCTCATTGCGAAGACTAACGTGTCTGCGGGTGATGAGTTGACGTATGACTATTTATTTGATCCTGATGAACCAGATGAATCAAAAGTACTTTGTCTGTGTAAAGCTCCAAACTGCAGGAAATTCATGAATTAG 3195 0.4275 MIIKRNLKSQMPIVKRCKLIDPVGEKDECFYARKKRKKMSSDYYPLNLLGDIASGAISVSFHGLLTEKGFSASWCTEVSCSPPCEVESNSNGGGSGGGATKNQGGEVQRPPLVRTSRGRVQVLPSRFNDSIIDNWRKDSKSSVHDCEIDDDFEPKRVKFGSKAQKNCNQNAKKGPKDEKISCKPQKYPTLCGGKARKDVGTRFRSFDVRERFLEMEGVESMGNKRASKENRERKDGLYGPEDFYAGDIVWAKARRREPFWPAIVIDPMSQAPELVIRSCVADAACVMFLGFAGNKNQRDYGWVRDGMIFPFMDYVDRFQEQSELSYYNPSQFQVAMEEAYLADQGHTEKLIADINSAAANTDIDDTILKVLQEDTGPNRYARYHYVNQDLFDKDTRPCEACGLALNFKMSKKIKDSTPGGQFLCKTCARLTKSNHYCGICKKVWNHSDSGSWVRCDVCKIWVHAECDKISRSIFKNLEGTEYFCPTCKAKFDFELSDSEKLRSKAKCNKNNGQLVLPNKVIVLCNGVEGIYFPSLHLVVCKCDFCGNEKQALSDWEKHTGSKLRNWKTSIRVKDSMLPLEQWMLQLAESHAKAVVTTKPKKPSLKERKQKLLTFLRERYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVKDFTSWVCKACETPHIKRECCLCPVKGGALKPTDIDPLWVHVTCAWFRPEVSFPSGEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHTMCASRAGYRMEMHCSEKNGRQTTKWVSYCAYHRAPNPDNVLIMQTPNGVISTKSLLKNKKKARSRLIASNIMKQDDTPLVDNAEDEPFTAARCRIFRRTNHTKKREADEAIFHQVRGPYHHPLDAIQRLNKYRHVVEEPEAFSSFRERLRHLQKTENERVCFGRSGIHGWGLFARRDIQEGDMVLEYRGEQVRSSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPDESKVLCLCKAPNCRKFMN* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0820 1064 ProSiteProfiles Zinc finger PHD-type profile. 628 679 IPR019787 -
Lan3g0820 1064 SUPERFAMILY Tudor/PWWP/MBT 238 344 - -
Lan3g0820 1064 ProSiteProfiles Zinc finger PHD-type profile. 434 490 IPR019787 -
Lan3g0820 1064 SUPERFAMILY FYVE/PHD zinc finger 628 693 IPR011011 -
Lan3g0820 1064 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1064 IPR025780 -
Lan3g0820 1064 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 491 IPR013083 -
Lan3g0820 1064 SUPERFAMILY FYVE/PHD zinc finger 434 491 IPR011011 -
Lan3g0820 1064 MobiDBLite consensus disorder prediction 86 102 - -
Lan3g0820 1064 ProSiteProfiles Post-SET domain profile. 1048 1064 IPR003616 -
Lan3g0820 1064 ProSiteProfiles PWWP domain profile. 245 314 IPR000313 -
Lan3g0820 1064 SUPERFAMILY SET domain 914 1061 IPR046341 -
Lan3g0820 1064 SMART set_7 922 1045 IPR001214 GO:0005515
Lan3g0820 1064 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 679 IPR013083 -
Lan3g0820 1064 CDD PHD_ATX3_4_5_like 630 676 IPR042011 -
Lan3g0820 1064 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 799 IPR013083 -
Lan3g0820 1064 Pfam PWWP domain 246 339 IPR000313 -
Lan3g0820 1064 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1064 - -
Lan3g0820 1064 Gene3D - 240 348 - -
Lan3g0820 1064 ProSiteProfiles Extended PHD (ePHD) domain profile. 682 797 IPR034732 -
Lan3g0820 1064 CDD SET_SETD1-like 909 1060 - -
Lan3g0820 1064 Pfam PHD-finger 436 489 IPR019787 -
Lan3g0820 1064 CDD PHD_TCF19_like 437 487 - -
Lan3g0820 1064 CDD ePHD_ATX3_4_5_like 685 796 IPR041955 -
Lan3g0820 1064 ProSitePatterns Zinc finger PHD-type signature. 631 676 IPR019786 -
Lan3g0820 1064 MobiDBLite consensus disorder prediction 86 119 - -
Lan3g0820 1064 Pfam SET domain 933 1038 IPR001214 GO:0005515
Lan3g0820 1064 Pfam PHD-zinc-finger like domain 684 796 - -
Lan3g0820 1064 SMART PHD_3 741 797 IPR001965 -
Lan3g0820 1064 SMART PHD_3 436 488 IPR001965 -
Lan3g0820 1064 SMART PHD_3 630 677 IPR001965 -
Lan3g0820 1064 SMART PostSET_3 1048 1064 IPR003616 -
Lan3g0820 1064 ProSiteProfiles SET domain profile. 922 1039 IPR001214 GO:0005515
Lan3g0820 1064 Gene3D SET domain 820 1064 IPR046341 -
Lan3g0820 1064 Pfam PHD-finger 643 677 - -
Lan3g0820 1064 PANTHER PHD FINGER PROTEINS 1 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0820 Lan-Chr3 15566537 15575474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0820 631 796 C2H2 Transcription Factor Family AT3G14740 33.526 8.39e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan3g0820 zf-HC5HC2H_2 2.9e-27 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0688 15 15543615 15553193 Lan3g0820 3 15566537 15575474 LSH
Lan14g0537 14 11085540 11095003 Lan3g0820 3 15566537 15575474 LSH