Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0818 ATGGGTCGTAGGAAGATTGAAATTAAGATGGTGAAGGACACAAACACAAGGCAAGTAACATTCTCAAAACGCAGAACAGGTTTATTCAAGAAAGCAAATGAATTATCCATTTTGTGTGGAACTGAAGTTGCTATTGTTGTGTTCTCCCCTGGGAATAAACCCTACTCTTTTGGGCACCCAGATGTTCAATCTGTTGCAGCAAAGTTTCTTGAACAAGAACCAAGATCAAATGGACCCTCTTCATGTGACACCAACATCATTATGTTGAATCAACAACTTTCTGATGTGATGAACCAGTTACATGAGGAAGAAAAGAAGGGTAAGTTTCATGATGAGGCATTGAAACAATGCAAAAAGAACCAAATCAAGGAGCTTCAAGAATTGCATGATTTAGCTATGGAGCTTAAAAGCAATATAAAATCTCGTTTAGATGAGATAGAAGCAGTGGAAACTATGCTAATGATTAAAGAGCAACCAGTGGAGTTTGATGAAAACCATGTTTCCAAAAGGAAAAGAAGAAAGATTTAA 528 0.3693 MGRRKIEIKMVKDTNTRQVTFSKRRTGLFKKANELSILCGTEVAIVVFSPGNKPYSFGHPDVQSVAAKFLEQEPRSNGPSSCDTNIIMLNQQLSDVMNQLHEEEKKGKFHDEALKQCKKNQIKELQELHDLAMELKSNIKSRLDEIEAVETMLMIKEQPVEFDENHVSKRKRRKI* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0818 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan3g0818 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Lan3g0818 175 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Lan3g0818 175 Coils Coil 118 138 - -
Lan3g0818 175 PANTHER MADS BOX PROTEIN 2 164 - -
Lan3g0818 175 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Lan3g0818 175 Coils Coil 86 106 - -
Lan3g0818 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan3g0818 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan3g0818 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan3g0818 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan3g0818 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0818 Lan-Chr3 15432457 15433026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0818 1 155 Type I MADS-box Gene Family AT2G34440 40.828 1.70e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan3g0818 SRF-TF 6.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0818 - - lang:109342374 197.208