Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan3g0811 | ATGCAGATCTTCGTGAAAACCCTAACGGGGAAAACCATCACCCTCGAAGTTGAATCCTCCGATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAATCAACCCTCCACCTTGTCCTCCGCCTCCGTGGTGGCGCCAAGAAGCGTAAGAAGAAGACCTATACCAAGCCAAAGAAGATCAAGCACAAGCATAAGAAGGTGAAGCTCGCGTTGCTGCAGTTCTATAAGGTTGATGATTCTGGAAAGGTTCAGAGGCTTAGGAAGGAGTGTCCTAATGCTGAGCGTCACTTTCTTCTTTTTTCATGTACAGTTTAG | 408 | 0.4951 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLALLQFYKVDDSGKVQRLRKECPNAERHFLLFSCTV* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan3g0811 | 135 | PANTHER | UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 | 1 | 126 | - | - | |
| Lan3g0811 | 135 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Lan3g0811 | 135 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Lan3g0811 | 135 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Lan3g0811 | 135 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Lan3g0811 | 135 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
| Lan3g0811 | 135 | Gene3D | - | 1 | 80 | - | - | |
| Lan3g0811 | 135 | PANTHER | UBIQUITIN | 1 | 126 | - | - | |
| Lan3g0811 | 135 | SUPERFAMILY | Ubiquitin-like | 1 | 93 | IPR029071 | - | |
| Lan3g0811 | 135 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Lan3g0811 | 135 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
| Lan3g0811 | 135 | Pfam | Ribosomal protein S27a | 103 | 124 | IPR002906 | GO:0003735|GO:0005840|GO:0006412 | |
| Lan3g0811 | 135 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515 | |
| Lan3g0811 | 135 | Gene3D | - | 81 | 131 | IPR038582 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan3g0811 | Lan-Chr3 | 15142312 | 15142761 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan3g0811 | 1 | 124 | Cytoplasmic Ribosomal Protein Gene Family | AT3G62250 | 97.581 | 3.10e-85 | 244 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan3g0811 | K02977 | - | gmx:100527854 | 213.772 |