Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0794 ATGGATTTATTGGTTCACGCTTCGTTAATCGAAGCGTCTGAGTTACTTTCCAACACCATCTTCACAATATTTGAGACTGTCAAAGCAGCCAATGAGGTTGTCATTCACAAGGAAAATTTTAAGAAATTCTCAATTCACTTGGAAAAGATCTCATTTACATTGAAGTCTTTGTCAAAGGAAGACACACACAATCCTGAGAGATTGATTAATGCTATGAATGCTCTCAACCGAGAGGTTCAAGTTGCTAAGAAGCTGGTTTTTGAATGCAACAATAGAGGTAAGGTTTATCTTTTAATCAATGCTAGAAGGATTGTTTCTCAGATGAAGGGTTGCATTGAAGATATAAGTCGAGCAGTAAGCCTCATCCCTTTGTCCTCTTTGGACATTAACTCTGGTTTGAACAAAGAGATAGGTGAGCTATGCCAGAACATGTTGGATTCTGAGTATCAAACAGCTGCAGCAGATGAGGAAATCTTGGAAAAAATCGAGACAGCGATAAACGAGGGAAACGCTGATCGGTCATATGCGAATCAGTTGCTGGTTTGTATTGCAGATGCTATTGGTGTATCTACTGACCATGCTGCTTTGAAGAGAGAATTTGAAGAGCTAAAAAGTGACATGGAGAGTGCTAAGTCTAGGAAAGATATGGCAGAAGTTCTACATATGGAGCAGATTATTGCAGTACTTGAAAAGTCTGATTCGATAACTTCAGCGCGAGAGAAGGAAAAGAAGTATTATGAAAGGAGAAATTCTTTGGGGAGGAGACCATTGGTGCCTTTGCATTCATTTTACTGCCCAATCTCTCTTGATATTATGGTGGATCCTGTGGAGACTTCTTCTGGCAAGACATTTGAGAGAAGTGCTATAAAGAGGTGGTTTGCCGAAGGGAACAATCATTGCCCCTTGACCATGTTGCCGGTGGATACTTCTATCCTGAGGCCTAATAAGACTCTCAGACAGTCTATCCAAGAATGGAAAGACAGGAACACGATCATTACGATTTCCAATATCAAATCCGAACTTGAAAAAGAAGATGAAGAAGAGGAAATACTTCAGTCTTTAAACAGATTGCAGGATATATGTTTAGAAAGAGAGGTTCACCGAGAATGGTTGAAAATGGAGAATTACATTGCTGTTCTTGTTGGACTTCTTGGTTCTAAAAATCGTGAAATAAGGAAGCATGTTCTGATCATCCTGTCTTTGCTTGCAGTGGATAGTGAAGAGAACAAGGAAGATATTGCTAAAGTGGATAACGCACTTGGATCAATTGTTCGCTCGCTTGCACGTCAAATCGAGGAAAGTAAGTTAGCATTGGAGTTGCTGTTGGAGTTATCTAAAAGTGAAATGGTGCGCGGTCTTGTAGGTAACATTCAAGGAAGCATACTTCTCCTCATGACAATGTTAAACAGTGATGACGTTGAAGCATCCAAAAATGCTCATGAGCTTCTGGAGAACCTCTCTTTCCTTGAACAGAATGTCATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTGATGCTGAACCTTTCTACAGGACCAGAAAGCATGAAGATAACCATGACAGAAACTTTGTCAAAAATTGCATTGACTGACCAAAATAAATTGTCCTTAGTCAAAGATGGAGCACTGAAGCCTCTTCTTCATCTGCTCTTACATAATGATGTGGAAATCAAGGAAGTGGTTGTGAAAGCTCTACTACAGCTCTCAACTTTGCCGGAGAACGGCCTGCAGATGATAAGGGAAGGTGTTGCTCAACCACTATTGGAATTGCTATACTGCCACAGTATACAGTCTCCTACTTTGCGCGAACAAGTTGTTTCCACAATCATGCATCTTGCCATATCAACTACTCACCAACAAGCTGAAGAAGAACAAGTTTCATTGTTAGATTCCGAGGAAGACATATACAAATTCTTCTCTCTAATTTCTTTAACAGGACCTGAGATACAAAACATGATTCTCAAAGCTTTCCAGGCATTGTGCAAGTCTTTCTCTGGCTTTACCACCAGAAAGAGGTTGAGACAGATATCAGCAGCCATAGTATTGGTCCATTTGGTAGAGCTTAATTCCCAAACAGTGCTGGTAGATGCCTTGAAGCTTTTCTATTGCTTAGCAGAAGACGGTGATTTCAGCAACTTCTCACCTCATGTAACTGAAAGTTTTATAAAAGTCTTGCTTACCATCATTGAGGCTTCTGATGAAGCTGAAGAAATGGTTACTGCTATGGGCATCATCTCAAAACTACCACAGGAGTCACACATAACCCAGTGGCTTCTAGATTCCAGGGCACTTCAAATTATTTTGGCTTGTCTTACAGATCAAATCAAACATGCCTCACATAAAAAGCAAGTCGTAGAGATCTCAGTCCAAGCGCTTTGTCGTTTTACTGTCTCATCAAATGTGGAGTTGCAGAAGAGAGTAGCTGAAGAAGGCCTAATCCCAGTGCTCGTGCGATTGCTGGTTTTTGGAACACCCTTTTCGAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCGGAAAGTTCATACCAATTGAGCAAGCTGATAAAGAAGCCGAGTATTTTCAAAGCCTGCTTTATAGCCAGTGAAATTGGTTGTCCAGCACACAAAGGCACTTGTACAGTTGAGTCTTCATTCTGCATTATACAAGCTAATGCCTTGGATCCCCTCGTGAGGTTGCTTGCAGATCAAGATATCGAAACATGTGAAGCTTCCTTAGATGCCCTACTGACTTTGCTGGATGTTGAAGCACCACAAAGTGGAAGTAAGGTACTTGCAGATGCAAATGCTATTACACCAATGATAAAATTGTTGAGCCTTCAAGCTACAACGTTGCAGGAAAAAACTCTAATAGCCTTAGAACAGATTTTTCAAGTGGATGAAGTGAAAAATAAGTACAAAACTAAGGCCACAATGCCCTTGGTGGATATGACTCAGAACAAAGATAGCCGTTTGAAAAGTCTTGCTGCCAAATGCCTTGCTCAATTGGGTGTGCTTGATAAACAATCTTCTTATTTTTAA 3021 0.4038 MDLLVHASLIEASELLSNTIFTIFETVKAANEVVIHKENFKKFSIHLEKISFTLKSLSKEDTHNPERLINAMNALNREVQVAKKLVFECNNRGKVYLLINARRIVSQMKGCIEDISRAVSLIPLSSLDINSGLNKEIGELCQNMLDSEYQTAAADEEILEKIETAINEGNADRSYANQLLVCIADAIGVSTDHAALKREFEELKSDMESAKSRKDMAEVLHMEQIIAVLEKSDSITSAREKEKKYYERRNSLGRRPLVPLHSFYCPISLDIMVDPVETSSGKTFERSAIKRWFAEGNNHCPLTMLPVDTSILRPNKTLRQSIQEWKDRNTIITISNIKSELEKEDEEEEILQSLNRLQDICLEREVHREWLKMENYIAVLVGLLGSKNREIRKHVLIILSLLAVDSEENKEDIAKVDNALGSIVRSLARQIEESKLALELLLELSKSEMVRGLVGNIQGSILLLMTMLNSDDVEASKNAHELLENLSFLEQNVIEMAKANYLKPLMLNLSTGPESMKITMTETLSKIALTDQNKLSLVKDGALKPLLHLLLHNDVEIKEVVVKALLQLSTLPENGLQMIREGVAQPLLELLYCHSIQSPTLREQVVSTIMHLAISTTHQQAEEEQVSLLDSEEDIYKFFSLISLTGPEIQNMILKAFQALCKSFSGFTTRKRLRQISAAIVLVHLVELNSQTVLVDALKLFYCLAEDGDFSNFSPHVTESFIKVLLTIIEASDEAEEMVTAMGIISKLPQESHITQWLLDSRALQIILACLTDQIKHASHKKQVVEISVQALCRFTVSSNVELQKRVAEEGLIPVLVRLLVFGTPFSKQNAAISIKQFSESSYQLSKLIKKPSIFKACFIASEIGCPAHKGTCTVESSFCIIQANALDPLVRLLADQDIETCEASLDALLTLLDVEAPQSGSKVLADANAITPMIKLLSLQATTLQEKTLIALEQIFQVDEVKNKYKTKATMPLVDMTQNKDSRLKSLAAKCLAQLGVLDKQSSYF* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0794 1006 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Lan3g0794 1006 SUPERFAMILY ARM repeat 681 914 IPR016024 -
Lan3g0794 1006 Gene3D - 860 998 IPR011989 -
Lan3g0794 1006 Gene3D - 12 125 IPR036537 GO:0007166
Lan3g0794 1006 Coils Coil 193 220 - -
Lan3g0794 1006 Pfam MCAfunc domain 26 145 IPR045766 -
Lan3g0794 1006 Pfam Armadillo/beta-catenin-like repeat 531 569 IPR000225 GO:0005515
Lan3g0794 1006 Pfam Armadillo/beta-catenin-like repeat 880 909 IPR000225 GO:0005515
Lan3g0794 1006 SUPERFAMILY ARM repeat 334 621 IPR016024 -
Lan3g0794 1006 SMART arm_5 800 840 IPR000225 GO:0005515
Lan3g0794 1006 SMART arm_5 571 614 IPR000225 GO:0005515
Lan3g0794 1006 SMART arm_5 489 529 IPR000225 GO:0005515
Lan3g0794 1006 SMART arm_5 874 914 IPR000225 GO:0005515
Lan3g0794 1006 SMART arm_5 918 958 IPR000225 GO:0005515
Lan3g0794 1006 SMART arm_5 530 570 IPR000225 GO:0005515
Lan3g0794 1006 SMART arm_5 751 797 IPR000225 GO:0005515
Lan3g0794 1006 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Lan3g0794 1006 Coils Coil 334 354 - -
Lan3g0794 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 335 IPR013083 -
Lan3g0794 1006 Gene3D - 336 662 IPR011989 -
Lan3g0794 1006 CDD RING-Ubox_PUB 263 304 IPR045210 -
Lan3g0794 1006 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 8 1006 - -
Lan3g0794 1006 Gene3D - 663 859 IPR011989 -
Lan3g0794 1006 SUPERFAMILY ARM repeat 879 999 IPR016024 -
Lan3g0794 1006 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Lan3g0794 1006 SUPERFAMILY RING/U-box 252 331 - -
Lan3g0794 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0794 Lan-Chr3 14803499 14810939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0794 262 1006 U-box Gene Family AT1G76390 27.556 1.89e-59 217