Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0784 ATGGCGGTTGCTGAGAATGCTGGAACCAAAATCGGTTCTTCAAGTCAAAATCTGGACAACAGTGTAGTTTCATCTGACACCACCACTGAGGTGGAGAAATCAAAACCCAGAAACGGTTCAATCAACGGTGGTGATGTGAATCTGAATGGTGTTTTCAAACATCATGATATAGCTCCAAAAGGAAACTACAATGCTCAATTGGGTCAGATTCGAAATGGGTTTGAAGGAAATGGTGTTCAGAATCAGCAGATGGTGGTGAATAATAATGGGTATGGTGGGGTTAGTGGAGAGAATGGAGGTGAAAGTTTCAAGAGGGATATGAGGGATTTGGAGGAGCTTTTGTCGAAGCTGAATCCCATGGCTGAGGAATTTGTGCCTCCATCACTGATAAACAATTTTGGTTACTTAGCTGCACATGATGCTGGGTTTGGTTACCCTAACACTTTTGTACTCCCCAACAATTATGGGATTGATAATGGGCAAAATAACAGAAGGAAGAAGAATGGCTATAATAACGGGAAGCGAAGATCCAGTAATAAAATGGACATGGAGAGGAAAGAAGAGATGATTAAGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCCCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTATGTGGGGATCCTAATTCTGTTCTTCGGTTTGCCTTTGTTGAGTTTACAGATGAGGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACAATGCTTGGATATTACCCGTTGCGAGTGCTGCCTTCAAAAACTGCCATTGCACCTGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCGAGAACAATTTATTGCACTAATATCGACAAGAAGCTTACCCAAGCAGATGTCAAACACTTCTTTCAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGAATACCAGCATTCTACTCGAATTGCATTTGTTGAGTTCACAGTGGCCGAGAGTGCAATTGCCGCTCTGAGCTGCAGTGGTGTGATTTTGGGTTCACTGCCCATAAGGGTTAGTCCATCAAAGACACCAGTCCGGTCTCGTTTCCCCCGCACTGCTATTCACTGA 1134 0.44 MAVAENAGTKIGSSSQNLDNSVVSSDTTTEVEKSKPRNGSINGGDVNLNGVFKHHDIAPKGNYNAQLGQIRNGFEGNGVQNQQMVVNNNGYGGVSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLINNFGYLAAHDAGFGYPNTFVLPNNYGIDNGQNNRRKKNGYNNGKRRSSNKMDMERKEEMIKRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFQSICGEVQRLRLLGEYQHSTRIAFVEFTVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRFPRTAIH* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0784 377 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 377 - -
Lan3g0784 377 SUPERFAMILY RNA-binding domain, RBD 163 269 IPR035979 GO:0003676
Lan3g0784 377 CDD RRM2_CID8_like 285 366 IPR034825 -
Lan3g0784 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Lan3g0784 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Lan3g0784 377 MobiDBLite consensus disorder prediction 156 182 - -
Lan3g0784 377 SUPERFAMILY RNA-binding domain, RBD 280 371 IPR035979 GO:0003676
Lan3g0784 377 CDD RRM1_CID8_like 190 269 IPR034823 -
Lan3g0784 377 Gene3D - 276 370 IPR012677 -
Lan3g0784 377 Gene3D - 153 269 IPR012677 -
Lan3g0784 377 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
Lan3g0784 377 SMART rrm1_1 290 361 IPR000504 GO:0003723
Lan3g0784 377 SMART rrm1_1 193 263 IPR000504 GO:0003723
Lan3g0784 377 MobiDBLite consensus disorder prediction 1 45 - -
Lan3g0784 377 MobiDBLite consensus disorder prediction 8 45 - -
Lan3g0784 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
Lan3g0784 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Lan3g0784 377 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0784 Lan-Chr3 14605087 14609021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0784 194 360 Eukaryotic Initiation Factors Gene Family AT1G34140 25.731 5.13e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0784 - - aip:107622933 568.926