Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0783 ATGGCTGTTGCTGAGAATGTTGGAACCAAAGTTGATTCTTCTAGTCAAAATTTGGATAACAGTGTTGTTTCATCTGAAACCATTGAGGTGGAGAAACCAAAACCTGTAAATGGTTCCCTCAATGGTGATCAGAATCTGAATGATGTGTTCAACCACCATGATAGAGCCCCCAACACTGTTTCAGTCCCAAACAGCAACTACGTGGTTCAAATGGGTCAGATTGAAAATGGGTTTAAAGGAAATGGGGTCCAGACCCTGCAGATGGTGGTGAATAATAATGGGTATGGTGGGGTTAATGGAGAGAATGGAGGTGAGAGTTTCAAGAAGGATATGAGAGATTTGGAAGAACTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCTCATCACTGACTAATAATCTTGGTTACTTAGCTGGACTTGGTGCTGCTGGGTTTGGGTACCCTAACAATTTTTTATTTCCCAATAATTATGGGAATGTTAATGGAGAAAAAAACAGAAGGAGGAAGAATGGCTATAATCAGGGGAAGCGAAGAGTTAATAATAAAACAGAAACGGTGATAAGAGACGAGATGGTTCGGAGGACTGTTTATGTGTCTGACATTGATCATCTGGTTACAGAAGAGCAGCTGGCAGCTCTCTTTCTTAATTGTGGGCAGGTTGTTGATTGCCGTGTTTGTGGGGATCCTAGTTCCATTCTTCGGTTTGCTTTTATTGAGTTTACTGATGAGGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGAACCATGCTTGGATTTTACCCATTGAAAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCAACATATTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATATATTGCACTAACATCGACAGGAAGCTTACTCAAGCAGATGTCAAACAATTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCAGCATTCTACTCGAATCGCATTTGTCGAGTTCACAGTGGCTGACAGTGCAATTGCAGCTCTGAATTGTAGTGGTGTGGTCTTGGGTTCAATGCCTATAAGGGTTAGTCCATCGAAGACACCGGTCCGGTCTCGTGCTCCTATGCACTGA 1140 0.4289 MAVAENVGTKVDSSSQNLDNSVVSSETIEVEKPKPVNGSLNGDQNLNDVFNHHDRAPNTVSVPNSNYVVQMGQIENGFKGNGVQTLQMVVNNNGYGGVNGENGGESFKKDMRDLEELLSKLNPMAEEFVPSSLTNNLGYLAGLGAAGFGYPNNFLFPNNYGNVNGEKNRRRKNGYNQGKRRVNNKTETVIRDEMVRRTVYVSDIDHLVTEEQLAALFLNCGQVVDCRVCGDPSSILRFAFIEFTDEEGARAALSLSGTMLGFYPLKVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDRKLTQADVKQFFESICGEVQRLRLLGDYQHSTRIAFVEFTVADSAIAALNCSGVVLGSMPIRVSPSKTPVRSRAPMH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0783 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 272 IPR000504 GO:0003723
Lan3g0783 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 370 IPR000504 GO:0003723
Lan3g0783 379 Pfam Ataxin-2 C-terminal region 118 132 IPR009818 -
Lan3g0783 379 MobiDBLite consensus disorder prediction 8 27 - -
Lan3g0783 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 363 IPR000504 GO:0003723
Lan3g0783 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 261 IPR000504 GO:0003723
Lan3g0783 379 SUPERFAMILY RNA-binding domain, RBD 177 273 IPR035979 GO:0003676
Lan3g0783 379 CDD RRM1_CID8_like 195 274 IPR034823 -
Lan3g0783 379 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 377 - -
Lan3g0783 379 MobiDBLite consensus disorder prediction 1 41 - -
Lan3g0783 379 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 377 - -
Lan3g0783 379 Gene3D - 279 376 IPR012677 -
Lan3g0783 379 Gene3D - 158 274 IPR012677 -
Lan3g0783 379 CDD RRM2_CID8_like 290 371 IPR034825 -
Lan3g0783 379 SMART rrm1_1 198 268 IPR000504 GO:0003723
Lan3g0783 379 SMART rrm1_1 295 366 IPR000504 GO:0003723
Lan3g0783 379 SUPERFAMILY RNA-binding domain, RBD 284 375 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0783 Lan-Chr3 14576389 14581049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0783 196 365 Eukaryotic Initiation Factors Gene Family AT1G34140 24.713 2.41e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0783 - - lang:109342359 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0610 15 13731951 13736065 Lan3g0783 3 14576389 14581049 LSH