Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0782 ATGGCTGTTGCTGAGAATGTTGGAACCAAAGTTGATTCTTCTAGTCAAAATTTGGATAACAGTGTTGTTTCATCTGAAACCATTGAGGTGGAGAAACCAAAACCTGTAAATGGTTCCCTCAATGGTGATCAGAATCTGAATGATGTGTTCAACCACCATGATAGAGCCCCCAACACTGTTTCAGTCCCAAACAGCAACTACGTGGTTCAAATGGGTCAGATTGAAAATGGGTTTAAAGGAAATGGGGTCCAGACCCTGCAGATGGTGGTGAATAATAATGGGTATGGTGGGGTTAATGGAGAGAATGGAGGTGAGAGTTTCAAGAAGGATATGAGAGATTTGGAAGAACTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCTCATCACTGACTAATAATCTTGGTTACTTAGCTGGACTTGGTGCTGCTGGGTTTGGGTACCCTAACAATTTTTTATTTCCCAATAATTATGGGAATGTTAATGGAGAAAAAAACAGAAGGAGGAAGAATGGCTATAATCAGGGGAAGCGAAGAGTTAATAATAAAACAGAAACGGTGATAAGAGACGAGATGGTTCGGAGGACTGTTTATGTGTCTGACATTGATCATCTGGTTACAGAAGAGCAGCTGGCAGCTCTCTTTCTTAATTGTGGGCAGGTTGTTGATTGCCGTGTTTGTGGGGATCCTAGTTCCATTCTTCGGTTTGCTTTTATTGAGTTTACTGATGAGGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGAACCATGCTTGGATTTTACCCATTGAAAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCAACATATTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTTCACCAACATCGACAGGAAGGTTTGGTTTGATCTTAGGTCAAATAATTATTTTCTAGACAATAAAAAACCCAGAGAAATCCGAAAAAAGTTTTAA 987 0.4073 MAVAENVGTKVDSSSQNLDNSVVSSETIEVEKPKPVNGSLNGDQNLNDVFNHHDRAPNTVSVPNSNYVVQMGQIENGFKGNGVQTLQMVVNNNGYGGVNGENGGESFKKDMRDLEELLSKLNPMAEEFVPSSLTNNLGYLAGLGAAGFGYPNNFLFPNNYGNVNGEKNRRRKNGYNQGKRRVNNKTETVIRDEMVRRTVYVSDIDHLVTEEQLAALFLNCGQVVDCRVCGDPSSILRFAFIEFTDEEGARAALSLSGTMLGFYPLKVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYFTNIDRKVWFDLRSNNYFLDNKKPREIRKKF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0782 328 CDD RRM1_CID8_like 195 274 IPR034823 -
Lan3g0782 328 MobiDBLite consensus disorder prediction 1 41 - -
Lan3g0782 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 272 IPR000504 GO:0003723
Lan3g0782 328 Gene3D - 158 274 IPR012677 -
Lan3g0782 328 SMART rrm1_1 198 268 IPR000504 GO:0003723
Lan3g0782 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 261 IPR000504 GO:0003723
Lan3g0782 328 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 305 - -
Lan3g0782 328 MobiDBLite consensus disorder prediction 8 27 - -
Lan3g0782 328 Pfam Ataxin-2 C-terminal region 118 132 IPR009818 -
Lan3g0782 328 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 305 - -
Lan3g0782 328 SUPERFAMILY RNA-binding domain, RBD 197 305 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0782 Lan-Chr3 14573559 14576563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0782 187 267 Eukaryotic Initiation Factors Gene Family AT1G34140 34.118 2.61e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0782 - - lang:109342359 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0608 15 13697301 13700939 Lan3g0782 3 14573559 14576563 LSH