Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0781 ATGAGTGGTCGTTTTTCTCGCACGATTTATGTTGGCAACCTGCCTTCAGATATCAGAGAATCAGAAATTGAAGATATCTTCTACAAGTATGGCCATATCGTGGAGATTGAGTTGAAAGTTCCACCTCGCCCTCCTTGTTACTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATCCGGGGTCGAGATGGATACAACTTCGATGGTTGTCGGTTAAGGGTGGAGCTTGCTCATGGTGGTAGGGGGCCATCATCAAGTGATCGTCGTGGCTATGGCAGTGGCAGTGGTAGTGGCGGGGCCCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGGCTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTACCCGTGATAGTGAAGGGACTTTTGGCCTTGTCGATTACACCAACTATGAAGACCTGAAATATGCTATTCGGAAGCTTGATGACACAGAGTTCAGAAATCCTTGGGCAAGATCCTATATTCGGGTGAGAAAGTTTGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCGCAGTAGAAGTCGCAGCAGAAGCCGCAGTAGAAGCCACAGCAGGAGCAGAAGTCCAAAAAGGAATAGGAGTAGATCTTTGGAGCGATCTGTGTCTAGGTCACGATCTAGATCTAGGTCACTATCTAGATCTAGGTCACTATCTAGATCTAGGTCAGCATCACCAACCAAGCTCTCTAGGCCAAGATCACAATCAAGATCTGAATCTCCACGCCAGGTGCTGTCAGGGAGTGGTTGA 837 0.4767 MSGRFSRTIYVGNLPSDIRESEIEDIFYKYGHIVEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGSGSGSGGARFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSEGTFGLVDYTNYEDLKYAIRKLDDTEFRNPWARSYIRVRKFESSRSRSRSRSRSRSRSRSRSRSHSRSRSPKRNRSRSLERSVSRSRSRSRSLSRSRSLSRSRSASPTKLSRPRSQSRSESPRQVLSGSG* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0781 278 MobiDBLite consensus disorder prediction 190 278 - -
Lan3g0781 278 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 272 - -
Lan3g0781 278 MobiDBLite consensus disorder prediction 245 278 - -
Lan3g0781 278 CDD RRM2_SF2_plant_like 113 188 - -
Lan3g0781 278 CDD RRM1_SF2_plant_like 8 79 - -
Lan3g0781 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Lan3g0781 278 SUPERFAMILY RNA-binding domain, RBD 6 179 IPR035979 GO:0003676
Lan3g0781 278 Gene3D - 2 111 IPR012677 -
Lan3g0781 278 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 272 - -
Lan3g0781 278 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lan3g0781 278 SMART rrm1_1 114 187 IPR000504 GO:0003723
Lan3g0781 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lan3g0781 278 MobiDBLite consensus disorder prediction 81 102 - -
Lan3g0781 278 MobiDBLite consensus disorder prediction 221 235 - -
Lan3g0781 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lan3g0781 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Lan3g0781 278 MobiDBLite consensus disorder prediction 198 220 - -
Lan3g0781 278 Gene3D - 113 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0781 Lan-Chr3 14543592 14549911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0781 9 175 Eukaryotic Initiation Factors Gene Family AT4G34110 25.434 1.82e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0781 K12890 - gmx:100800653 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0606 15 13668687 13673867 Lan3g0781 3 14543592 14549911 LSH