Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0780 ATGGGTTCCAGCGAGTTGGCTTGCTCTTATGCTACCTTGATCCTCCACGATGAAGAGATTGCAATCACCGCGGAGAAGATTTCCACTGTGTTGAAGGCTGCTCAGGTGAACGTTGAATCATACTGGCCAAGTTTGTTTGCTAAGCTTGCTCAGAAGAGGAACATCGATGACCTCATCTTGAATTCCGGTGGAGGCGGTGCTGCTGCGGTTGCCGTCGCTGCTCCTGCGGCCGCCGCCGTTGGTGCTGCCGCCGCAGCTCCAGCTGTTCAGGAAAAGAAGGATGAGGCCAAGGAAGAAAGTGATGATGACATGGGTTTCAGCTTGTTTGATTAG 333 0.5285 MGSSELACSYATLILHDEEIAITAEKISTVLKAAQVNVESYWPSLFAKLAQKRNIDDLILNSGGGGAAAVAVAAPAAAAVGAAAAAPAVQEKKDEAKEESDDDMGFSLFD* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0780 110 MobiDBLite consensus disorder prediction 85 110 - -
Lan3g0780 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lan3g0780 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Lan3g0780 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Lan3g0780 110 MobiDBLite consensus disorder prediction 90 104 - -
Lan3g0780 110 Pfam 60s Acidic ribosomal protein 22 109 - -
Lan3g0780 110 CDD Ribosomal_P1 5 109 - -
Lan3g0780 110 Gene3D - 2 63 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0780 Lan-Chr3 14519372 14521041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0780 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 57.895 1.22e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0780 K02942 - rcu:8269526 132.88