Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0726 ATGACAACTACTGTTGCAGAAGAAGATTCTACAAAACAGCTTGTGCTTTTTCAGAATCAGAGTGAAGGACAAAATGGGAATTTCACCAACAACCCTTATCCTCCACCTACAGTCCTGTACGATGATCTTGTCCGTGATGGATTCCTCTTCTTGGAAAAGCTTCAATCTTTTCACAACTCATTTGGAACTAAATTTAAGGTTCCAACTATAGGAGGAAAGCCTTTAGATCTATATCTCCTTTTCCTTGAAGTAACATCTCGAGGTGGTCTTGAGAAGGTGATTGAAGATCGTAAATGGAGGGAAGTGGTTATGGTCTTTAACTTTCGAGATACCATAACGAGCGCATCGTTTATGGTGCGTAAATACTATCTATCATTGCTTTACCACTTTGAGCAGGTGTATTACTTTCGGAAGCAAGTTCCTCCTTCCTTGACCCCCGATCCCTTGAATAGGAGCCTCATCAATTACTCTGCAACAATTGGGGAAGGTGGCACTATGAATGGTTTACCTGGTCAGGTTAGTCCAGTACAACAGCTTGGTTCTGTGGTGCTTGGAACAATTGATAGTAAATTCGATGGTGGATATGTAGTTACAGTGAATCTCGGTTCTGAACAGCTGAAGGGTATCCTGTATCATGATCCTGCAAATGTGTCATGGAGTTCTTATACTGAAAGGGTGCCTAGTTCTCAGAACAGGAAGAGATCAAGATTGGCATTACGAGATCCGTCGCAGCCTAAGTCAAACAGGAGTGGTTACAATTTCTTCTTTTCTGAGAATTATGCTAGGCTAAAGGCATCATTCAATGGACAAGAGAGGGAAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGACAGATGCAGAAAGACAGGTTTATCAGGAGAAGGGACTAGAAGACAAAGAAAGATATAGGAGAGAAATGCTCAAATTCAAATCCAATAACTCTTCTCCTCAATAG 960 0.4115 MTTTVAEEDSTKQLVLFQNQSEGQNGNFTNNPYPPPTVLYDDLVRDGFLFLEKLQSFHNSFGTKFKVPTIGGKPLDLYLLFLEVTSRGGLEKVIEDRKWREVVMVFNFRDTITSASFMVRKYYLSLLYHFEQVYYFRKQVPPSLTPDPLNRSLINYSATIGEGGTMNGLPGQVSPVQQLGSVVLGTIDSKFDGGYVVTVNLGSEQLKGILYHDPANVSWSSYTERVPSSQNRKRSRLALRDPSQPKSNRSGYNFFFSENYARLKASFNGQEREISKRIGFLWNNLTDAERQVYQEKGLEDKERYRREMLKFKSNNSSPQ* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0726 319 MobiDBLite consensus disorder prediction 222 246 - -
Lan3g0726 319 SUPERFAMILY ARID-like 49 144 IPR036431 GO:0003677
Lan3g0726 319 CDD HMGB-UBF_HMG-box 245 308 - -
Lan3g0726 319 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 245 312 IPR009071 -
Lan3g0726 319 Gene3D - 41 145 IPR036431 GO:0003677
Lan3g0726 319 SMART hmgende2 244 313 IPR009071 -
Lan3g0726 319 SMART ARID_2 41 131 - -
Lan3g0726 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 22 318 - -
Lan3g0726 319 Pfam HMG (high mobility group) box 245 312 IPR009071 -
Lan3g0726 319 Pfam ARID/BRIGHT DNA binding domain 50 131 IPR001606 GO:0003677
Lan3g0726 319 SUPERFAMILY HMG-box 238 315 IPR036910 -
Lan3g0726 319 SMART bright_3 45 136 IPR001606 GO:0003677
Lan3g0726 319 Gene3D High mobility group box domain 228 319 IPR036910 -
Lan3g0726 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 318 - -
Lan3g0726 319 ProSiteProfiles ARID domain profile. 44 135 IPR001606 GO:0003677
Lan3g0726 319 CDD ARID_HMGB9-like 46 131 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0726 Lan-Chr3 13356482 13364447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0726 40 317 ARID Transcription Factor Family AT3G13350 51.228 3.05e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan3g0726 ARID 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0726 - - adu:107491521 415.616