Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0721 ATGCTGATCTCTGATGGAAGAGATAGTGATGTGTTCTTTGACTCATTGGATAGCTTCTCACCTCTTCAAGAATGTGTTTTGACCAAACAAAAGTTTGGTTATGAGGTTTGGGTGAATGAGCCTCTTCGTGTGAAGGAAAGAAGGGAAAAATTTCTACAAGGGATGAGCTTAGTTAATGATTCTTCCAAGGTTTGTTTGCAAGAGAAAATAGTGAGCTTTGATGAATCATCGGTGAGCTTGGGAAAGGAGAGGATCTGGAATTGCAATGGAGCTGTCACAAATGCTTGTATTGTGCTTGATGATCATGTTCCTGAGAAACTGGTTACTGCAGGATGTGAATCAAGTTTCGAAGCACAGGTCTTGTTTGATGAACTCAAAGGATGCCAAGACCATGAAGATAAAGCGGAGCCGGATTTAAGTTTTCAAGGGAAGGTACATGAGTTCTCTTCTTCAAATCAAGAGTACATAGATAGAGAAGGTGAGGCTGTAGAAAAATTTAGGGACTTCAAAATTTGTAAGAACGAAAATAAAAGTTGGTGGGCACGCATCTTAGACAGCATAAAACAAAGTAAAGGGAAAGATCGATTAAAATTGAATACAAGGACAAGTGAAAGTGGTAGAATACATGTAAGACGGAACAAAAAGAAGTGGATGGAATTGAGTGCACTGTACATTGGACAAGAGATTAGAGCACACAAAGGCCTAATCTGGACCATAAAGTTTAGTCCCAATAGCAAGTATCTTGCTAGTGGAGGTGAAGATGGTGTTGTACGCGTATGGCGCGTTGTATCCCTTGATACATCCGGTGCTTGCTTCAGTACAGATGACAGTATTATTAGCAAAGTGAAACATGACATTTCGTGTTCTCAGAGGAAAAACTCAAGCCAATCCTTAAATGTGCTTCCAAACAAGATTTTACAAATCGAGGAATCACCACTGCAAGAATTTTATGGTCATTCTGGTGATGTATTGGATTTAGCTTGGTCTAGTTCAGATATTCTCCTTTCATCTTCTACGGATAAAACTGTTCGCTTGTGGCAAATTGGTTATAATGAATGTCATAGTGTTTTCCATCACAAGGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATAAGTGGGTCCATAGATGGTAAAGTCCGAATATGGGGGGTACTGGAAGAGCGAGTAGTTGATTGGGCAGACATACGAGATGCCGTAAGTGCTATAAGTTACCAGCCAGATGGAAAGGGGTTTGTAGTTGGTACCCTTACAGGCACTTGTCGCTTTTTTATTGCTTCAGGCAAACATTTCCGGCTTGAGACACAAACACATGTCAATGGAAAGAAGAGAACTTCTGGCAACAAGATTACCAGCATTCAGTTTTCCCAGAAACACCATCAGAGAATTATGATCACATCAGAAGATTCCAAAGTTAGAATATTGGATGGCATTGAACTTGTTCGGGAATACAAAGGCCTTCCAAAGTCAGGAAGTCAGATGTCCGGTTCATTTACATCAACCGAAAAACATTTAATTTCAGTTGGAGACGACTCTGGTATTTATTTATGGAACTTCAATGAGTTTAGAAATGCTTCTTCCAAACACACAAAATCTATGTATTCCTGTGAATACTTTTCCTCCAAGGGGGTCACTGTTGCAATACCTTGGTCAGATATTGCAAGCTCTCGCAACAATTCTCCCCGCTATTCTTCAGAAGTGCAACCACAGTTAGAGACAGTTCTTGCGGCTAAAGACTCGGAATGTTTTTCTTTTCGCAGTTGGTTCTTAATTGATGGTACTTGTCAAGGTTCTATGACATGGCCTGAGGAAAAGCTTGTCAGTTTAGATTCACCTTTTCCGGAAGATGGATTTGATCAGCAGCAGTTATGCCTCAAAAATCTTTTCCATAATAATTCTGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGATTCTGATGGAATTATCAAGACATTCCACAACTTTGGATTACCTGTTAGGCTTTAA 2007 0.3981 MLISDGRDSDVFFDSLDSFSPLQECVLTKQKFGYEVWVNEPLRVKERREKFLQGMSLVNDSSKVCLQEKIVSFDESSVSLGKERIWNCNGAVTNACIVLDDHVPEKLVTAGCESSFEAQVLFDELKGCQDHEDKAEPDLSFQGKVHEFSSSNQEYIDREGEAVEKFRDFKICKNENKSWWARILDSIKQSKGKDRLKLNTRTSESGRIHVRRNKKKWMELSALYIGQEIRAHKGLIWTIKFSPNSKYLASGGEDGVVRVWRVVSLDTSGACFSTDDSIISKVKHDISCSQRKNSSQSLNVLPNKILQIEESPLQEFYGHSGDVLDLAWSSSDILLSSSTDKTVRLWQIGYNECHSVFHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGVLEERVVDWADIRDAVSAISYQPDGKGFVVGTLTGTCRFFIASGKHFRLETQTHVNGKKRTSGNKITSIQFSQKHHQRIMITSEDSKVRILDGIELVREYKGLPKSGSQMSGSFTSTEKHLISVGDDSGIYLWNFNEFRNASSKHTKSMYSCEYFSSKGVTVAIPWSDIASSRNNSPRYSSEVQPQLETVLAAKDSECFSFRSWFLIDGTCQGSMTWPEEKLVSLDSPFPEDGFDQQQLCLKNLFHNNSVSETWGLSIVAADSDGIIKTFHNFGLPVRL* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0721 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 262 - -
Lan3g0721 668 SUPERFAMILY WD40 repeat-like 225 532 IPR036322 GO:0005515
Lan3g0721 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Lan3g0721 668 PANTHER WD REPEAT DOMAIN 44 1 668 IPR040324 -
Lan3g0721 668 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 668 - -
Lan3g0721 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 388 - -
Lan3g0721 668 Pfam WD domain, G-beta repeat 357 388 IPR001680 GO:0005515
Lan3g0721 668 Pfam WD domain, G-beta repeat 228 260 IPR001680 GO:0005515
Lan3g0721 668 Pfam WD domain, G-beta repeat 311 346 IPR001680 GO:0005515
Lan3g0721 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Lan3g0721 668 Gene3D - 214 561 IPR015943 GO:0005515
Lan3g0721 668 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Lan3g0721 668 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Lan3g0721 668 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Lan3g0721 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 348 IPR001680 GO:0005515
Lan3g0721 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 262 IPR001680 GO:0005515
Lan3g0721 668 SMART WD40_4 391 430 IPR001680 GO:0005515
Lan3g0721 668 SMART WD40_4 309 347 IPR001680 GO:0005515
Lan3g0721 668 SMART WD40_4 482 523 IPR001680 GO:0005515
Lan3g0721 668 SMART WD40_4 445 481 IPR001680 GO:0005515
Lan3g0721 668 SMART WD40_4 350 389 IPR001680 GO:0005515
Lan3g0721 668 SMART WD40_4 222 261 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0721 Lan-Chr3 13203804 13208768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0721 218 486 Miscellaneous Gene Families AT5G08390 21.091 4.87e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0721 K20241 - gmx:100780979 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0721 3 13203804 13208768 Lan3g0721 3 13203804 13208768 ECH
Lan14g0519 14 10834371 10838574 Lan3g0721 3 13203804 13208768 LSH
Lan15g0536 15 12442705 12447456 Lan3g0721 3 13203804 13208768 LSH
Lan12g0682 12 13629032 13635285 Lan3g0721 3 13203804 13208768 PCT
Lan1g1569 1 26424661 26430104 Lan3g0721 3 13203804 13208768 PCT
Lan3g0721 3 13203804 13208768 Lan12g0682 12 13629032 13635285 PCT
Lan3g0721 3 13203804 13208768 Lan1g1569 1 26424661 26430104 PCT