Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0720 ATGGCTCCTGCCACCTCATTACGATCACCGACGGCATCTCAGAGGCACGTCGGCTTCATCCGCCGCACTCAGGCGCCGCAGCTCCCTCCTCCGTCGCCGGAACCAGCGATTAAGAAGTACAAGATGATGACGGAAATAATGGCGAAGGCGCGGTACGTCGTGTTGGAGAGCGACAGTTACAGCGACCTGAGCTGCGAACAATGTGGCTCCGGCGAGTTGCCGGAGGAGCTGCTTCTGTGCGATAAATGTGATAAAGGATTTCACATGAAATGTGTGAGCCCGATTGTGGTGAGGATCCCGATTGGATCGTGGCTTTGCCCTAAGTGTTCGGGAGAGAGAATGAAACGAGTTAGAAGTTTCTCTCAGAAGAAGATATATGAGTTTTTTGGGATTCAGGTTGATCATAATGTTCAGAACAAAGCTTCTTCTTCTCAAGATGCTAGGAAGCGTCGGAAACGTTCAGGACCTCGGATAGTACAGAAGAAAAAAAGGAGACTATTACCATTTGTTCCTTCAGAAGATCCTGCCCAGAGACTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTGAATATTGAATTCAGTGATCACCTCACTTACTTGCCTGGAATGGCTCCTAGATCCGCTAATGAAGCCGGCTTAGAAAGTGGTGGCATGCAGATTCTTACCAAGGAGGATACGGAAACCATGGAGCACTGCAAAGCTATGTCCAAAAGAGGCGAATGCCCACCTTTCATGGTTGTTTTCGATTCATGTGAAGGCTATACTGTGGAGGCTGATGGCCCAATAAAGGATATGACATTCATTGCAGAATACACTGGCGATGTGGACTACCTCAAGAAACGAGAACGCGATGATTGTGATAGCATAATGACCCTGATTTTAGCATCAGAACCTGTGCATAGTCTTGTCATTTGCGCGGACAAACGTGGAAATATTGCTCGCTTCATTAGTGGCATAAACAATCATACCCCGGATGGTAAGAAGAAGCAGAATTGCAAATGTTTAAGGTACAATGTTAATGGGGAATCCAGAGTCTTTTTGGTCGCCACTCGTGATATTGCTAAGGGGGAGAGGCTTTATTATGACTATAATGGTTATGAAGATGAATACCCAACTCATCATTTTGTCTGA 1140 0.464 MAPATSLRSPTASQRHVGFIRRTQAPQLPPPSPEPAIKKYKMMTEIMAKARYVVLESDSYSDLSCEQCGSGELPEELLLCDKCDKGFHMKCVSPIVVRIPIGSWLCPKCSGERMKRVRSFSQKKIYEFFGIQVDHNVQNKASSSQDARKRRKRSGPRIVQKKKRRLLPFVPSEDPAQRLKQMGSLASALTALNIEFSDHLTYLPGMAPRSANEAGLESGGMQILTKEDTETMEHCKAMSKRGECPPFMVVFDSCEGYTVEADGPIKDMTFIAEYTGDVDYLKKRERDDCDSIMTLILASEPVHSLVICADKRGNIARFISGINNHTPDGKKKQNCKCLRYNVNGESRVFLVATRDIAKGERLYYDYNGYEDEYPTHHFV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0720 379 CDD PHD_RSF1 65 109 - -
Lan3g0720 379 MobiDBLite consensus disorder prediction 1 20 - -
Lan3g0720 379 SMART PHD_3 64 110 IPR001965 -
Lan3g0720 379 ProSitePatterns Zinc finger PHD-type signature. 65 109 IPR019786 -
Lan3g0720 379 PANTHER HISTONE ACETYLTRANSFERASE 18 377 - -
Lan3g0720 379 SUPERFAMILY SET domain 238 368 IPR046341 -
Lan3g0720 379 Gene3D SET domain 150 379 IPR046341 -
Lan3g0720 379 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 18 377 - -
Lan3g0720 379 SMART set_7 245 373 IPR001214 GO:0005515
Lan3g0720 379 SUPERFAMILY FYVE/PHD zinc finger 29 115 IPR011011 -
Lan3g0720 379 ProSiteProfiles Zinc finger PHD-type profile. 62 112 IPR019787 -
Lan3g0720 379 CDD SET_ATXR5_6-like 242 379 - -
Lan3g0720 379 ProSiteProfiles SET domain profile. 245 367 IPR001214 GO:0005515
Lan3g0720 379 MobiDBLite consensus disorder prediction 1 34 - -
Lan3g0720 379 Pfam PHD-finger 65 110 IPR019787 -
Lan3g0720 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 130 IPR013083 -
Lan3g0720 379 Pfam SET domain 79 367 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0720 Lan-Chr3 13164396 13168560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0720 62 115 C2H2 Transcription Factor Family AT3G01460 44.643 1.95e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan3g0720 SET 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0720 K24406 - gmx:100785817 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0720 3 13164396 13168560 Lan3g0720 3 13164396 13168560 ECH
Lan15g0534 15 12392036 12397956 Lan3g0720 3 13164396 13168560 LSH