Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0717 ATGCCCACGTGGTGGAGTAAAAAACCCAACAACAAGAACACCAAAACCCAACAACAACAACAACAACACCAAACAAATGGAAATTCCAACACTACCCTCAACTTCAACAAGTCACCGATTAACAAGGTTAAGAAAAACGCTGAAAAACCAAAGAGTTTCGATGAAGTCACCGGCGCCGCCTTTCTCTCCCGGAATTCTCCTCGTGTCAGCAAGGATTTCACTTCCTACGGTGGCGCCGTCGTTGATGTCGATGGTGGTGATAAGATAGGACTCCCTTTACCACGTCCTTGTGTTTCTTCTAGCTTCAGCAATGAACAAGGCCTTGTTTTTGGATCTGGTTCCTTTTCTGCTGGTTCTAGCGTTAGTTCCTCTGGCTCCATTGATGATCATTCGATTTCTCAAATTAATGCATCGAGGCAAGTTGACATGAAGTTCAATGTGAGACCAAAAAGCCCGGGTCCTGTGTCAAGAGGGCCTACCAGCCCTACTTCACCTCTCCATTCACGGTTGAATGCTTTGAGTCTGGACTCCCCTACTAGCCGACAAGAAGATGGAAGGAGTCAATGTCATCCATTGCCACTTCCTCCAGGCTCTCCTACAAGTCCTTCTTCTCTTTCCAACACACGAGCAAATGGACAGCTAGAAAACAATACCAGTAACCGGGGCAAGTGGAAGAAAGGAAAGCTTCTGGGACGGGGAACTTTTGGACATGTTTACCAAGGATTCCATAGTGAAACTGGACAAATGTGTGCAATAAAAGAAGTTAGGCTTGTCTGCGATGACCAATCTTCAAAAGAATGCCTCAAACAACTTAATCAGGAGATAAATTTGCTTAGTCAGCTTTCTCATCCAAACATTGTTCAATACTATGGGAGTGACTTGGGAGAAGAAGCACTTTCAGTTTACTTGGAATTTGTATCCGGTGGCTCTATTCATAAACTACTTCAGGAATATGGACCCTTTGGGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTTCATGGAAGAAATACATTACATAGGGATATCAAAGGGGCCAACATACTAGTTGATCCTAATGGTGAAATCAAGCTTGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCGATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTGATGAACACAAACGGTTATAGTCTTCCTGTCGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAATGGGGAAGCCTCCTTGGAATCAGTATGAAGGGGTAGCAGCAATATTTAAAATTGGTAACAGCAAAGATATGCCCGAAATTCCTGAGCATCTTTCAAATGATGCAAAGAATTTCATTAAGTTATGCTTACAAAGAGATCCATTAGCTCGTCCAACAGCGCAAATGCTACTAGACCATCCCTTTATTCGAGACCAGTCAGCAACAAAATCTGTGAATGTCAGAATAACGAGAGATGCTTTCCCTTACATGCTTGATGGAAGCCGGACACCGCCAGTTTTAGAGCATAACTCCAATTCCAATAGAACAAATAATACTTTAATCAACGGAGACTATGCAACGAAGCAAGTTGTTGCATCTTCACGAGCAGTAAAGAGTACAAGAGATAGCACAAGAATGATCACATCTTTACCAGTGTCTCCCTGCTCAAGTCCATTGCGACAATACGGACCGGCACACAAGAGTTGTTTCTTTTCTCCTCATCATCCTTCATACACAATGATGGGACAAAATAACCTCAATTCATATCCGTTAAGATCGAACGCAGCATTTACCCTTGAACCATGGCAGGAAAAGTCTCTATACAGAGCTCATACCCCACCCGGTGGATCCCCAAGAACGAGACTCATCTGA 1884 0.4326 MPTWWSKKPNNKNTKTQQQQQQHQTNGNSNTTLNFNKSPINKVKKNAEKPKSFDEVTGAAFLSRNSPRVSKDFTSYGGAVVDVDGGDKIGLPLPRPCVSSSFSNEQGLVFGSGSFSAGSSVSSSGSIDDHSISQINASRQVDMKFNVRPKSPGPVSRGPTSPTSPLHSRLNALSLDSPTSRQEDGRSQCHPLPLPPGSPTSPSSLSNTRANGQLENNTSNRGKWKKGKLLGRGTFGHVYQGFHSETGQMCAIKEVRLVCDDQSSKECLKQLNQEINLLSQLSHPNIVQYYGSDLGEEALSVYLEFVSGGSIHKLLQEYGPFGEPVIQNYTRQIVSGLSYLHGRNTLHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMAMGKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPLARPTAQMLLDHPFIRDQSATKSVNVRITRDAFPYMLDGSRTPPVLEHNSNSNRTNNTLINGDYATKQVVASSRAVKSTRDSTRMITSLPVSPCSSPLRQYGPAHKSCFFSPHHPSYTMMGQNNLNSYPLRSNAAFTLEPWQEKSLYRAHTPPGGSPRTRLI* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0717 627 ProSiteProfiles Protein kinase domain profile. 224 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0717 627 PANTHER MAP KINASE KINASE KINASE 1 608 - -
Lan3g0717 627 Gene3D Transferase(Phosphotransferase) domain 1 221 502 - -
Lan3g0717 627 Pfam Protein kinase domain 225 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0717 627 MobiDBLite consensus disorder prediction 137 226 - -
Lan3g0717 627 MobiDBLite consensus disorder prediction 1 51 - -
Lan3g0717 627 MobiDBLite consensus disorder prediction 1 41 - -
Lan3g0717 627 ProSitePatterns Protein kinases ATP-binding region signature. 230 253 IPR017441 GO:0005524
Lan3g0717 627 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 608 - -
Lan3g0717 627 MobiDBLite consensus disorder prediction 160 186 - -
Lan3g0717 627 SMART serkin_6 224 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0717 627 CDD STKc_MEKK1_plant 223 480 - -
Lan3g0717 627 SUPERFAMILY Protein kinase-like (PK-like) 222 532 IPR011009 -
Lan3g0717 627 MobiDBLite consensus disorder prediction 201 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0717 Lan-Chr3 13004609 13015567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0717 66 504 MAP Kinase Kinase Kinase AT1G53570 63.496 2.15e-180 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan3g0717 Pkinase 1.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0717 K04421 - gmx:100813122 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0717 3 13004609 13015567 Lan3g0717 3 13004609 13015567 ECH
Lan14g0461 14 9906959 9913025 Lan3g0717 3 13004609 13015567 LSH
Lan12g0689 12 13718236 13723133 Lan3g0717 3 13004609 13015567 PCT
Lan18g0208 18 2063614 2068712 Lan3g0717 3 13004609 13015567 PCT
Lan3g0717 3 13004609 13015567 Lan12g0689 12 13718236 13723133 PCT