Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0715 ATGAACAAGGTCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCTATAAGTCTAGACTTGCTTGAAGATCCAGTGACCTTAAGCACAGGCCAAACATATGACAGATCAAACATAGTAAAATGGTTAGATGCTGGTAATCTTACATGTCCTGTCACAATGCAGAAGCTTCATGATTCATCTATTGTTCCAAACCACACACTAAGACATTTGATTGATCAGTGGCTTCAACTTTGTCACCAATTTGACACTGGTAACTCTGAAACCATAGATTATCTAGCTTCTATAAAACACACCCTTCAATCTCATGGTTCCACCTTAGAAAACAAGGTCCATGCACTTGATAAAATTAGAGTTTTATCATATGAGTATTGCTCTTTTAAGAAGTCTTGTTTCATCAAGTTGAGTTTCTTGCCTCTACTCTTGGAACTAGTTTTTGGAACAGAATATGCACAAGTGTCCAAAAAGCACATGGAGTTGAAGGAACTAGCACTTTTTTGTGTTATGAAATTGTTACCCCTTGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCCAAGTTTGCAATATTTATGCAATTATTTGAAAAGGGTACTATTTCAATGAAGATTATTTTGTGTAATCTTATAGAATCAACAGCATCATCATCAAAGACAGAAGAGGTATGTTACATGCTTGGAAACTCTCACAAACTAGTACATAATATTGTTCTATTTTGTCACCAAAATTGTGAACTTTCTAAGGCTGCAATCAAAGCCATTTCAGCATTATGTTCATTACAATCCAACAAAGAAAGTTTGGTAAGAGCAGGAGCAATAGATGGAATCATAACATACATTTCAGGTTGTGAAACAAAGCAGAAGAATTTAGCACCATTGGCCATGACCATAATAGAGAAACTCTTGGTTCTAGAGAGTGCTAAAGAGACATTGGTGAATAACCCAAATGGGGTTGAAACTTTGGTAAAGATGGTTTTCATGGTGTGTAATCAAGAATGCAGTGAAGGTGCTGTTGAAGTGCTTTTGATTATTTGTGGTGAATTTAGAAGTGCAAGAGAGGAAGCTATTGGTGCTGGAGTTTTGACTCAATTGTTGTTCCTTCTGCAGAGTCAGTGTGGCACAAAAACTAAGACAAAGGCTAGAATGCTTCTCAAATTGCTTAGATCAAAATGGTCTGAGGAATCAAAACAGGTTTAG 1203 0.3641 MNKVQIEITIPHLFRCPISLDLLEDPVTLSTGQTYDRSNIVKWLDAGNLTCPVTMQKLHDSSIVPNHTLRHLIDQWLQLCHQFDTGNSETIDYLASIKHTLQSHGSTLENKVHALDKIRVLSYEYCSFKKSCFIKLSFLPLLLELVFGTEYAQVSKKHMELKELALFCVMKLLPLVSLEPLNMIKDESKFAIFMQLFEKGTISMKIILCNLIESTASSSKTEEVCYMLGNSHKLVHNIVLFCHQNCELSKAAIKAISALCSLQSNKESLVRAGAIDGIITYISGCETKQKNLAPLAMTIIEKLLVLESAKETLVNNPNGVETLVKMVFMVCNQECSEGAVEVLLIICGEFRSAREEAIGAGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESKQV* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0715 400 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lan3g0715 400 PANTHER OS02G0542800 PROTEIN 9 392 - -
Lan3g0715 400 Gene3D - 86 392 IPR011989 -
Lan3g0715 400 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lan3g0715 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 85 IPR013083 -
Lan3g0715 400 SUPERFAMILY ARM repeat 107 389 IPR016024 -
Lan3g0715 400 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lan3g0715 400 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lan3g0715 400 PANTHER WDSAM1 PROTEIN 9 392 IPR045185 GO:0061630
Lan3g0715 400 SUPERFAMILY RING/U-box 8 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0715 Lan-Chr3 12937163 12938522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0715 1 397 U-box Gene Family AT1G49780 29.227 4.19e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0715 - - gmx:100815247 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0715 3 12937163 12938522 Lan3g0715 3 12937163 12938522 ECH