Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0707 ATGATGTCTAGAACTAACAGTGTTTCTTGGATGGATCATACCAACAACATAGAAGTACCAAACACAAACACTTGTGGTTTTGTTGAAACTAGAGATGATGAATTAGGCTCTATATGTGGCTTCAAATCACCTATGATGGAAGTTTTTGATGAGGAATGGTACATAGCTAACAACAGCATTCAAAACAACCCTGAAGATATGATTAGGGACATGACCTTTTCTCCAAACTTTGCTGACCCATCAGATAACCTTTTGTTACACCACAATGTCTCTGTGGACTCTTCTTCTTCTTGCTCTCCATCTTCTTCTATGTTCAACAACCTTGACCCTTCACAATTGCACCAATGTTTTCTCTCACCCAACAATGCAAAACTCAACCCTTTATCTTCTCTACTCAAGAACAACAACAACAACAACAATAACAACCCTTTTGAGATGGGTTGTGAGGTTGGGTTTATGGAGCCTCAAGCTTCAACAACTTCACCATCATTGCTGAACAGAACTTCTTCTTCACTATTGGGTGGCTTCAATGACTTGAACACTAAGAATCAATTGGTCCTTCCTAACTTGTGCTCATCAGCTGCTACAAGCATTATACAATTGCACCAAAACACAACCAAATTTGCAGGTTTTCAGAACAACTTTGAAGAGGGTTCTGGAGGAAACAAAGCAATGTTTGTGAACAGGTCCAAGATTTTAAGACCCCTTGATTCTTTACCTCCTTCTGGAGCACAACCAACTTTGTTTCAAAAGAGAGCAGCGCTAAGAAAAAACTTGGGATCAGAAAGTGGTGTTGGTGTTGATGTGGGTGGTTCTGATAGGAAGAAGATGATGATGAAGATGAGTACTACTGTGGAATTAGATGTGAAAGATGGAAGCTTTGATGGGTCTATATTGAACTATGATTCTGATGATTTGACTGAGAGTAATAATAACATTAATAAGGTGGAAGAGAATAATGGGAGGAATGGTGGAAATAGTTCTAATGGGAACAGTACTGTGACTGGTGTTGTGGATCAGAAAGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCGGAACGCCGCCGGAGGAAGAAGCTTAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAATATTAGCAAGATGGACAGGGCTTCAATACTTGGGGATGCAATTGAGTACTTGAAGGACCTTCTGCAAAGGATCAATGACCTTCATAATGAATTGGAATCAACACCTGCTGGCTCTTCACTCACCCCCGTCTCAACCTTTCATCCTTTGACACCTACTCCAACAGCACTTCCGAGCCGTATTAAAGAAGAACTCTGCCCCAGCTCACTGCCAAGTCCCAATGGCCAACCTGCCAGGGTTGAGGTTAGGCTGCGCGAAGGAAGAGCTGTAAATATCCACATGTTTTGTTCCCGCAAACCTGGTGTCTTGCTCTCAACCATGAGGGCTTTGGATAATATGGGATTAGACATTCAGCAGGCTGTTATCAGCTGTTTCAATGGATTCGCTATGGATATTTTTCGAGCAGAGCAACTCGTAGAAGGTCAGGATGTTCATCCAGAGCAAATAAAAGCAGTACTCTTGGATTCAGCTGACTTCAATGGCATGATCTAG 1614 0.4176 MMSRTNSVSWMDHTNNIEVPNTNTCGFVETRDDELGSICGFKSPMMEVFDEEWYIANNSIQNNPEDMIRDMTFSPNFADPSDNLLLHHNVSVDSSSSCSPSSSMFNNLDPSQLHQCFLSPNNAKLNPLSSLLKNNNNNNNNNPFEMGCEVGFMEPQASTTSPSLLNRTSSSLLGGFNDLNTKNQLVLPNLCSSAATSIIQLHQNTTKFAGFQNNFEEGSGGNKAMFVNRSKILRPLDSLPPSGAQPTLFQKRAALRKNLGSESGVGVDVGGSDRKKMMMKMSTTVELDVKDGSFDGSILNYDSDDLTESNNNINKVEENNGRNGGNSSNGNSTVTGVVDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYLKDLLQRINDLHNELESTPAGSSLTPVSTFHPLTPTPTALPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCSRKPGVLLSTMRALDNMGLDIQQAVISCFNGFAMDIFRAEQLVEGQDVHPEQIKAVLLDSADFNGMI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0707 537 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Lan3g0707 537 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 415 IPR036638 GO:0046983
Lan3g0707 537 MobiDBLite consensus disorder prediction 305 348 - -
Lan3g0707 537 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 104 537 - -
Lan3g0707 537 Coils Coil 389 409 - -
Lan3g0707 537 MobiDBLite consensus disorder prediction 305 338 - -
Lan3g0707 537 SMART finulus 352 401 IPR011598 GO:0046983
Lan3g0707 537 CDD bHLH_AtAMS_like 349 414 - -
Lan3g0707 537 Gene3D - 339 410 IPR036638 GO:0046983
Lan3g0707 537 PANTHER BHLH TRANSCRIPTIONAL FACTOR 104 537 - -
Lan3g0707 537 Pfam Helix-loop-helix DNA-binding domain 353 395 IPR011598 GO:0046983
Lan3g0707 537 CDD ACT_UUR-ACR-like 466 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0707 Lan-Chr3 12582844 12586585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0707 31 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.800 4.53e-121 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g0707 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0707 - - tcc:18605190 564.303