Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0703 ATGGCTGCTTTTTCATACCAATACCACCCTTTTCTTGTTGACTCGTCAGCATTTTTCCTCAATAATATAAACATTTCCCCGACTTCTCAGTTTAACTTCCATCAACAAACCTCTCTTGATGTCACAAATCAGAATACTAGCTGTGTTGAACAAAGTTCCAAGATTACCATTAGTGACAATGAACCTTCTGTGGCAAAAAATATTAGTCCTCAATCCTCTATGGTAGTGGACAAGCTTGAAATTGGTGAGCAGGTCACACAGAAGGTGACTCCTATGATGAAGAAGAGGAGAATCAGAAGTGTATCTTCCTTGAGTAACTCTCAATCAAAGGATGTAACAGAAGGGAAAATCAAGCGACAGAGAAAGAGCAACAATGGTGGCGTGAAAAGAGAGAACAAGCCAAAAGAAGAAAAGAAGGGTCAGAGAAAAAGTTCTGAAGAGCCTCCAAAGGGGTATATCCATGTGAGAGCAAGAAGAGGTGAAGCAACTGATAGCCACAGCCTTGCTGAAAGGATTAGAAGAGAGAAAATAAGTGAAAGGATGAAGATGTTGCAACTACTGGTGCCAGGGTGTGATAAGGTTACCGGAAAGGCTTTGATGCTGGACGAAATAATCAATCATGTTCAATCTTTACAAAATCAAGTTGAGCTTTTGTCATTGAAGCTTGCTTCTGTGAACCCCATGTTCTATGACTTAGCAACAGACTTGGACACCCTTTTGGTTAGACCAGAGGATTTAGCTTTTACAATAGATAAGGAATTCTAG 765 0.4013 MAAFSYQYHPFLVDSSAFFLNNINISPTSQFNFHQQTSLDVTNQNTSCVEQSSKITISDNEPSVAKNISPQSSMVVDKLEIGEQVTQKVTPMMKKRRIRSVSSLSNSQSKDVTEGKIKRQRKSNNGGVKRENKPKEEKKGQRKSSEEPPKGYIHVRARRGEATDSHSLAERIRREKISERMKMLQLLVPGCDKVTGKALMLDEIINHVQSLQNQVELLSLKLASVNPMFYDLATDLDTLLVRPEDLAFTIDKEF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0703 254 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 243 - -
Lan3g0703 254 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Lan3g0703 254 SMART finulus 167 217 IPR011598 GO:0046983
Lan3g0703 254 Coils Coil 201 221 - -
Lan3g0703 254 MobiDBLite consensus disorder prediction 91 167 - -
Lan3g0703 254 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 243 IPR024097 GO:0006355
Lan3g0703 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 228 IPR036638 GO:0046983
Lan3g0703 254 MobiDBLite consensus disorder prediction 112 167 - -
Lan3g0703 254 Gene3D - 158 230 IPR036638 GO:0046983
Lan3g0703 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983
Lan3g0703 254 CDD bHLH_AtBPE_like 151 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0703 Lan-Chr3 12318281 12321672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0703 100 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 59.310 1.94e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g0703 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0703 - - gmx:100806696 355.91