Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0640 ATGAAGCAAAGTGGAGGAATGGGAAATGGGTCTCAGGAAAGGAACCAACTTGTTCGAGCTTGTCATGGTTCAGATAGTGGGTCTAATAAACCCTTGAAGAATTTGAATGGTCAAGTTTGTGAAATATGTGGTGATACTGTTGGATTTACAACCACTGGTGATGTGTTTGTTGATTGTCAAGAGTGTGGCTTCCCACTTTGCCATAATTGCTATGAATATGAACTGAAAAATGGGAACCAATCTTGCCCCAAGAGTCACAAAGTGATTCCTCAATTGGAGGGAGATGATGATGACGATGATGTTGATAATCCAGAGAATGAGGCCAGTTATGGACAAGGAAATACTAAGGCAGGGCTGCAGTGGGAAGAAGAAGCTGACCTATCTTCATCTTCTGGACATGATTCTCAACAACCAAAATCCCATGTCACAAATGGGCAGCTGATGTCTGGTAAGATTGCATGTGCTACTCATAAAAATCAATCTCTGCGAGCCACATGTAGTCCTTTGTCTCCATCTGGAAGGGTTCACTCACTTCCTTATATTGATCCAAAGCAACCAGGTCTTGAGAGTGATGAGGAGATCAGAAGAGTGCCAGAGATAGGGGGTGAATTTTCTGGAACATCAGCTGCTCGCCCAGAAACTGGTTCAACCGTGGCTCCTGAAAGTGTTCACGGTACAAGTGATGGTCAGAGGAAGAGAGGGAGAAACCCAGCTGACAAAGAAAGCAAGCGATTAAAGAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCTTACTTGAATGATTTGGAAACTAAAGTCAAAGACTTGGAGAAGAAGAATTCCGAGCTCAAAGAGAGACTATCTACTGTGCAGAATGAGAATCAAATGCTAAGACAAATACTGAAAAACACAACAGCTAGTAGGAGAGGGAGCAATAGTGGTGCCAATGCTGAATGA 957 0.4347 MKQSGGMGNGSQERNQLVRACHGSDSGSNKPLKNLNGQVCEICGDTVGFTTTGDVFVDCQECGFPLCHNCYEYELKNGNQSCPKSHKVIPQLEGDDDDDDVDNPENEASYGQGNTKAGLQWEEEADLSSSSGHDSQQPKSHVTNGQLMSGKIACATHKNQSLRATCSPLSPSGRVHSLPYIDPKQPGLESDEEIRRVPEIGGEFSGTSAARPETGSTVAPESVHGTSDGQRKRGRNPADKESKRLKRLLRNRVSAQQARERKKAYLNDLETKVKDLEKKNSELKERLSTVQNENQMLRQILKNTTASRRGSNSGANAE* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0640 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 107 IPR013083 -
Lan3g0640 318 Coils Coil 238 300 - -
Lan3g0640 318 Coils Coil 312 318 - -
Lan3g0640 318 SUPERFAMILY Leucine zipper domain 243 301 IPR046347 GO:0003700|GO:0006355
Lan3g0640 318 MobiDBLite consensus disorder prediction 124 143 - -
Lan3g0640 318 Pfam Zinc-binding RING-finger 30 101 IPR027934 -
Lan3g0640 318 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 241 304 IPR004827 GO:0003700|GO:0006355
Lan3g0640 318 MobiDBLite consensus disorder prediction 226 244 - -
Lan3g0640 318 MobiDBLite consensus disorder prediction 209 224 - -
Lan3g0640 318 MobiDBLite consensus disorder prediction 165 190 - -
Lan3g0640 318 SMART brlzneu 239 303 IPR004827 GO:0003700|GO:0006355
Lan3g0640 318 Pfam bZIP transcription factor 240 301 IPR004827 GO:0003700|GO:0006355
Lan3g0640 318 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 159 309 - -
Lan3g0640 318 CDD bZIP_HY5-like 244 295 - -
Lan3g0640 318 SUPERFAMILY RING/U-box 26 104 - -
Lan3g0640 318 MobiDBLite consensus disorder prediction 202 244 - -
Lan3g0640 318 MobiDBLite consensus disorder prediction 88 143 - -
Lan3g0640 318 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 159 309 IPR044280 GO:0000981|GO:0045944
Lan3g0640 318 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 246 261 IPR004827 GO:0003700|GO:0006355
Lan3g0640 318 Gene3D Single helix bin 262 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0640 Lan-Chr3 9335700 9339121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0640 179 300 bZIP Transcription Factor Family AT5G11260 66.667 9.02e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan3g0640 zf-UDP 1.6e-27 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0640 K10999 K16241 aprc:113855639 460.685