Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0620 ATGGAACCCATGGATATAGTTGGAAAAGCAAAGGAAGACGCTTCTCTTCCTAAAGCAACAATGACGAAAATTATTAAGGAGATGTTGCCCCCAGATGTCCGTGTGGCGAGAGATACTCAAGATCTACTAATCGAATGTTGCATAGAGTTTATAAACCTCCTCTCATCAGAGTCTAATGAAGTCTGTGGCAAGGAGGAAAGAAGGACGATTGCACCTGAACATGTATTGAAGGCTTTAGGGGGTCTTGGATTTGGTGATTACATTGAGGAAGTTTATTCAGCATATGAACAGCACAAAGTGGAGACAATGGACTCTCTAAAAGGTGCTAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCTGAGGCACGCGCTAGAATGAATGGTGGGGAAATTGCTTCTAAGCAGCAAGATGCTGACCAAAGTTTATAG 462 0.4329 MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCIEFINLLSSESNEVCGKEERRTIAPEHVLKALGGLGFGDYIEEVYSAYEQHKVETMDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGEIASKQQDADQSL* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0620 153 Gene3D Histone, subunit A 5 147 IPR009072 GO:0046982
Lan3g0620 153 Coils Coil 114 134 - -
Lan3g0620 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Lan3g0620 153 PANTHER PROTEIN DR1 HOMOLOG 1 152 IPR044255 -
Lan3g0620 153 SUPERFAMILY Histone-fold 12 141 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0620 Lan-Chr3 7743859 7748089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0620 1 140 CCAAT-DR1 Transcription Factor Family AT5G23090 82.270 6.09e-85 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan3g0620 CBFD_NFYB_HMF 3e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0620 K21751 - gmx:547635 276.944