Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0619 ATGACCGAACCAGACCACAACCATGACACCTTGCCTTCTTCTGTTCTCCAAACTAAGCAGAAGAAGCTTCGCAAAAGAAAAAGAGCTCGCAAAACTGAACAGGTAAACCACCAATCGGAGGAACAAGATAACAAAGATGATGCAGAATCCTTGGAGGAGGAGAATGAAGGAAATATGAATGATGGGGATGTTAGTCAAGAACAAAATTTAGAAGATGATGATGATGATGATAATAGTGAGGATAAGGAAGGGGGGCAGAACGTTGCCTCTGGAATTATGAGTGTGGAGTCTTTTGAGTCTCTTGGATTGTCTGAACCAACTTATAAGGCTATTATGGATATGGGTTTCCACCACATGACTCAGATTCAAGCAAGGTCAATTCCGCCACTTCTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACAGGGGCTGGAAAAACACTTGCCTTTTTAACTCCAGCTGTGGAATTGCTGTACAACATTCAGTTTACACCTCGCAGTGGTACTGGTGTTGTTGTAATATGCCCGACTAGAGAGCTCGCAATTCAGACACATGCTGTAGCAAAGGAACTACTCAAGTATCATTCACAAACACTTGGATTGGTTATTGGAGGTGCAGGTAGAAAGGGGGAAGCTGAACGAATTGTTAAAGGGGTAAATCTGTTGGTAGCAACGCCTGGGCGTCTTCTCGATCACCTTCAAAATACTAAGGGATTCATATATAAAAACTTGAAGTGCCTCATAATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTACGATACTTCCAAAGAGCAGGCAAACATCTCTGTTTTCAGCCACACAAACGAAGAAGGTTAAGGATCTTGCTCGCTTGTCATTTCAGACACCTCCTATCTACATTGATGTGGATGATGGGAGAACAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTTCCTGTGCCAAGCGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATACCAGTCCAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCCGTCAAATTCCATGCAGACCTTCTGAAGTGCACTGGGATGGATTGCTTAAATATCCATGGAAAACAAAAGCAGCATGCCCGGACAACAACCTTCTTTAATTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCGAAGGAATATATTCATCGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAGGGAAACGCTTTGCTTTTTCTGATTCCAGAAGAAGTGCAATTTCTTCGCTATTTGAAGGCAGCAAAGGTCCCTGTGAAAGAGTATGCATTTGATGAAAAGAAGCTTGCAAATGTGCAGTCACAACTGGAGAAGTTGGTGGCTGGTATTTATCACTTGAACAATATGGCCAAAGATGCTTATAGGTCATACTTATTGGCATACAATTCACACTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACTGGCTGTTGCTGCTTCATTCTGTTTCTCAAACCCGCCTAAGGTGAATCTGAACATAGACAGTAGTGCTTCGAAGCATAAGAAGAAAATACGTAAGGTCGAAGGAAGCAGGTCGAGCTTCCGTGACAAGAATCCCTATGCAAAGAGAAATGCTGATGATGAGTGA 1734 0.4268 MTEPDHNHDTLPSSVLQTKQKKLRKRKRARKTEQVNHQSEEQDNKDDAESLEEENEGNMNDGDVSQEQNLEDDDDDDNSEDKEGGQNVASGIMSVESFESLGLSEPTYKAIMDMGFHHMTQIQARSIPPLLIGKDVLGAARTGAGKTLAFLTPAVELLYNIQFTPRSGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGAGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIITILPKSRQTSLFSATQTKKVKDLARLSFQTPPIYIDVDDGRTKVTNEGLQQGYVVVSCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGMDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEEVQFLRYLKAAKVPVKEYAFDEKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYLLAYNSHSMKDIFNVHRLDLLAVAASFCFSNPPKVNLNIDSSASKHKKKIRKVEGSRSSFRDKNPYAKRNADDE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0619 577 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 248 256 IPR000629 -
Lan3g0619 577 Gene3D - 313 559 IPR027417 -
Lan3g0619 577 MobiDBLite consensus disorder prediction 551 577 - -
Lan3g0619 577 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 124 IPR014014 GO:0003724
Lan3g0619 577 PANTHER RNA HELICASE 67 573 - -
Lan3g0619 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 458 IPR027417 -
Lan3g0619 577 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 486 IPR001650 -
Lan3g0619 577 SMART DUF4217_3 477 540 IPR025313 -
Lan3g0619 577 MobiDBLite consensus disorder prediction 45 81 - -
Lan3g0619 577 SMART helicmild6 356 437 IPR001650 -
Lan3g0619 577 SMART ultradead3 115 320 IPR014001 -
Lan3g0619 577 Gene3D - 73 308 IPR027417 -
Lan3g0619 577 CDD DEADc_DDX18 107 304 IPR044773 GO:0003724|GO:0005524
Lan3g0619 577 Pfam Domain of unknown function (DUF4217) 478 538 IPR025313 -
Lan3g0619 577 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 302 IPR014001 -
Lan3g0619 577 MobiDBLite consensus disorder prediction 558 577 - -
Lan3g0619 577 CDD SF2_C_DEAD 317 447 - -
Lan3g0619 577 Pfam DEAD/DEAH box helicase 120 291 IPR011545 GO:0003676|GO:0005524
Lan3g0619 577 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 67 573 - -
Lan3g0619 577 Pfam Helicase conserved C-terminal domain 332 436 IPR001650 -
Lan3g0619 577 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0619 Lan-Chr3 7617147 7627870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0619 96 455 Eukaryotic Initiation Factors Gene Family AT3G13920 31.507 9.14e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0619 K13179 - gmx:100798290 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0764 10 10270503 10276315 Lan3g0619 3 7617147 7627870 LSH
Lan5g0202 5 2427084 2432265 Lan3g0619 3 7617147 7627870 LSH