Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0616 ATGAGAGAAGAAGATTCAAACTGGTTTTCAAGATGGGAAGAAGAACTACCCTCCCCAGAGGACCTTATGCCCTTATCCCAAACCCTAATCACCCCTGATCTAGCCATAGCCTTCAATATCAAAACCAACAACAACAACAACATCATTCAACAACAGCAACAAAGTCTTCATCTTCAACAACAACATAATATTCAGCTTCAACAACAACAACAATTGCCAACAACAACTTCAAACCCCACCACCCAACACCAACAACAACCCTCTTCCGGCGACTTTGCTGACTCTGGTGAGCTGGGCTCCGGCAACGGCGGCGATGAACCAGCACGGACACTCAAGCGTCCGCGCCTTGTGTGGACTCCGCAGCTCCACAAGCGCTTCGTCGATGCCGTGGCTCACCTCGGCATCAAAAACGCCGTGCCCAAGACCATAATGCAGCTGATGAGCGTCGATGGTTTGACCCGAGAGAACGTCGCGAGCCACCTGCAGAAATACCGCCTTTATCTCAAGCGAATGCAGGGGCTTTCCGGCGGCGGCTCCGGTGGTGGTGGTGCCGGTGGTGGTGTTGATGCAGCGACTGACCACTTGTTCGCCAGCTCGCCTGTGCCACCGCATTTCTTGCAGCCAGGGAGGAGTAATTCGGATCATTTCATGCCTTTTGTGCAGGTGCCTGCCCTCCAGCACCATCACCAGATGGCCGCGGCTGCAGCTGTGCAGCAGCCACAGTATCACAGGCAGGTGGGGCATTTCGGGTCGCTGCAGAATGGACACTTTGAGCATCCCTTCATGTCTAGGCAGTCTCAGCATCAGCTTCATAGAATGGGGGCACCAGTGCACATCCCTGTGGATGGTTTTGTTGAGGACAAGGAATCGGCAAATGCGTCCGGAGGGAGAAAGGTTCTTACTCTATTTCCAAATGGAGATGATTGA 927 0.5307 MREEDSNWFSRWEEELPSPEDLMPLSQTLITPDLAIAFNIKTNNNNNIIQQQQQSLHLQQQHNIQLQQQQQLPTTTSNPTTQHQQQPSSGDFADSGELGSGNGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGSGGGGAGGGVDAATDHLFASSPVPPHFLQPGRSNSDHFMPFVQVPALQHHHQMAAAAAVQQPQYHRQVGHFGSLQNGHFEHPFMSRQSQHQLHRMGAPVHIPVDGFVEDKESANASGGRKVLTLFPNGDD* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0616 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 169 IPR017930 -
Lan3g0616 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 114 166 IPR006447 GO:0003677
Lan3g0616 308 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 308 - -
Lan3g0616 308 Pfam Myb-like DNA-binding domain 117 165 IPR001005 -
Lan3g0616 308 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 308 IPR044841 GO:0003700|GO:0006355
Lan3g0616 308 SUPERFAMILY Homeodomain-like 110 170 IPR009057 -
Lan3g0616 308 MobiDBLite consensus disorder prediction 60 112 - -
Lan3g0616 308 MobiDBLite consensus disorder prediction 60 95 - -
Lan3g0616 308 Gene3D - 110 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0616 Lan-Chr3 7557663 7560147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0616 1 308 G2-like Transcription Factor Family AT3G10760 57.550 1.99e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan3g0616 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0616 - - jre:108983410 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0833 10 12200578 12202425 Lan3g0616 3 7557663 7560147 LSH
Lan6g1650 6 26068037 26070291 Lan3g0616 3 7557663 7560147 LSH