Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0613 ATGTTTTTCCAAATCGACAACGACGATGATCATTCTTCTCAACCCTCACAATCTCAAACCCACCACCTTCTCGGATTCATCATCGCCAACATCGTCGGAACCAGATACTACCCCGGCTACATCAGTGGCCGCGAAATGGTGGGTCTGGTCCGTGAACCACTTAACCCATATGACTCCAACGCTATCAAAGTTCTCAATACCCAAACCATTCAAGTGGGTCACATTGAACGTTCTGTTGCTGCTGTATTAGCCCCCCTTATTGATTCAAATGACATTGTTGTTGAAGGCATTGTTCCTAATTCTCGTTCTAAGGGTAAGATTCCATGTCAAGTTCATATCTTTGCGGCGGTTTACGCCTTCCCGACTTTAAAAGAATTGATTTTGAGTAGTGGGTTGCAGTTGATTTCGGATTCTGATGCTGCTTTTACTATGTCTGACTCTATGGCGGTTAAAGAGACTAGGGCTGAGAAAAGGGGTAGGAGTGTGGATGATATTTTTAAGCTTGTTGATGAGACGAATAGGAATCGCGGGTTGGAGGATTTGGTGCCTTCGAAAAGTGTGATTAAGACTGAGCTTTTGAAGCATCAGAAGGAAGGTTTGTGGTGGTTAGTTCGTAGAGAGAATTCCGATGAGTTGCCGCTGTTTTGGGAAGAGAGGGATGGTAACTATGTGAATGTGTTAACGAATTATAAAACTAATGCAAGGCCTGAACCTTTGAGAGGTGGAATTTTTGCGGATGATATGGGGTTGGGGAAGACTTTAACTTTGCTTTCTTTGATTGCTTTCGACAAAGAACAAAGCATTGGTAACACTAGCCATGAAGTGAGGGATGAAGGGTCGAGTTTGTCTATTAAGAAGGGTAAGAGGGGAAGAGTGAGCAACGAGGGTAGTGGTTCGCAGAAAAGACGCAAGATTATGAGTCATTCTTTAGATGATGTATCTATAGGAAAAGAGGTTTGTGTGGCTGATACTTGTTCCATTGACATGAAAACAAAAACGACATTGGTTGTGTGCCCTACTTCTGTGTTGTCAACATGGATATCACAACTAGAAGAACATACCAAACGAGGTTCGTTGAAGGCTTACTTGTATTACGGGAACAGAACCAAGGATGCTGATGAACTTAAGATGCATGATTTAGTATTGACCACATATGCCATTTTATCCAGTGAAGAAACCTCATCGGACTCGCCTCTAAAGAAATTAGAGTGGTGGAGAATCATTTTGGACGAAGCACACACAATAAAAAATGTCAATGCTCAGCAGAGTAAAGCAGCCATTAAACTGAATGCTAAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTCATACGATTTGTTTTCTATTATGGCATTTTTAAAATTCGAACCATTTTCAATAAAGAACTATTGGCGAAGCTTGGTGCAACGTCCTCTCAATCAGGGAATGGAGAAAGGGCTCTCTCGTTTGCAGGTTTTGATGGCAACAATTTCACTACGAAGAACAAAAGACAAGGGATTAGTAGGGCTGCCATCAAAGACCATAGAGACTCATTATGTTGAACTTTCTGTGGAAGAACGTGAACTGTATGATCTGGTCAAAGCGGAATCGAAGAGATTGATGATGGGTTATATCAATAATGGTAGTCTTGTGAACCATTATTCTAGTGTACTTAGTATGATTCTACGACTTCGCCAAATCTGTACCGATTTGGCACTGTGCCCTTCGGATCTCAAATCAGTACTCTCTTCAGCTAATATTGAAGATGTTTCCAATAACCCTGAATTGCTAAAAGCATTGGTTGAGGTGCTGCAGGATGGTGAAGATTTTGACTGTCCAATTTGTATATCTCCACCAACAAATATTGTAATTACATGCTGTGCTCACATTTATTGCCGTGAGTGTATTCTCAGAACTCTACAATGCAGCAACCCTTGTTGTCCTCTTTGTCGTCATCCCCTCTCAGAGTCTGACTTGTTCTCGGCCCCTCCCGAATCATCCAAGACTGCTGATGCTGAACTTTCCTCATCAGAACCAAGGCTATTTTCTAAAGCGTCCGCTCTGATAAAACTTCTCATCGACTCAAGGGACCAAAATCCTACGACAAAGTCAGTTGTATTTTCACAATTCCGTAAGATGATACTTTTACTTGAAGAGCCTCTAAAAGCAGCTGGCTTCAAGACTTTGCGTCTCGATGGGAATATGAATGCGACACAAAGGGCCCATGTTATCAAGCAATTTAGAGTCTCGGGAGGAGAGCCAATGGTTATGCTTGCAAGCCTTAAAGCTTCAAGTACCGGTATAAATCTCACGGCTGCTTCTAGAGTATACTTTATGGAGCCATGGTGGAACCCTGCGGTTGAGGAACAGGCAATGGATCGTGTCCACCGCATTGGGCAAAAAGAGGATGTCAAAGTTGTTAGATTGGTTGCTCAAAACAGCATTGAGGAAAGGATATTAATGTTGCAAGAGAAGAAGAAAAAGCTAGCAAGGGAAGCATTTGGGAAGGGATCAAAGGATGTTGGCATGGGCATGGAAGATGTGCGTTTCCTTTTGTCGCAATGA 2553 0.425 MFFQIDNDDDHSSQPSQSQTHHLLGFIIANIVGTRYYPGYISGREMVGLVREPLNPYDSNAIKVLNTQTIQVGHIERSVAAVLAPLIDSNDIVVEGIVPNSRSKGKIPCQVHIFAAVYAFPTLKELILSSGLQLISDSDAAFTMSDSMAVKETRAEKRGRSVDDIFKLVDETNRNRGLEDLVPSKSVIKTELLKHQKEGLWWLVRRENSDELPLFWEERDGNYVNVLTNYKTNARPEPLRGGIFADDMGLGKTLTLLSLIAFDKEQSIGNTSHEVRDEGSSLSIKKGKRGRVSNEGSGSQKRRKIMSHSLDDVSIGKEVCVADTCSIDMKTKTTLVVCPTSVLSTWISQLEEHTKRGSLKAYLYYGNRTKDADELKMHDLVLTTYAILSSEETSSDSPLKKLEWWRIILDEAHTIKNVNAQQSKAAIKLNAKRRWAVTGTPIQNGSYDLFSIMAFLKFEPFSIKNYWRSLVQRPLNQGMEKGLSRLQVLMATISLRRTKDKGLVGLPSKTIETHYVELSVEERELYDLVKAESKRLMMGYINNGSLVNHYSSVLSMILRLRQICTDLALCPSDLKSVLSSANIEDVSNNPELLKALVEVLQDGEDFDCPICISPPTNIVITCCAHIYCRECILRTLQCSNPCCPLCRHPLSESDLFSAPPESSKTADAELSSSEPRLFSKASALIKLLIDSRDQNPTTKSVVFSQFRKMILLLEEPLKAAGFKTLRLDGNMNATQRAHVIKQFRVSGGEPMVMLASLKASSTGINLTAASRVYFMEPWWNPAVEEQAMDRVHRIGQKEDVKVVRLVAQNSIEERILMLQEKKKKLAREAFGKGSKDVGMGMEDVRFLLSQ* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0613 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 843 IPR027417 -
Lan3g0613 850 SMART HIRAN_2 24 121 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lan3g0613 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 673 IPR013083 -
Lan3g0613 850 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 319 835 - -
Lan3g0613 850 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 9 271 - -
Lan3g0613 850 CDD SF2_C_SNF 679 806 - -
Lan3g0613 850 Gene3D - 15 134 - -
Lan3g0613 850 Coils Coil 808 828 - -
Lan3g0613 850 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 319 835 - -
Lan3g0613 850 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 9 271 - -
Lan3g0613 850 Gene3D - 163 277 IPR038718 -
Lan3g0613 850 SMART ultradead3 188 471 IPR014001 -
Lan3g0613 850 MobiDBLite consensus disorder prediction 270 303 - -
Lan3g0613 850 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 459 IPR014001 -
Lan3g0613 850 ProSitePatterns Zinc finger RING-type signature. 623 632 IPR017907 -
Lan3g0613 850 MobiDBLite consensus disorder prediction 278 303 - -
Lan3g0613 850 ProSiteProfiles Zinc finger RING-type profile. 608 647 IPR001841 -
Lan3g0613 850 SUPERFAMILY RING/U-box 593 653 - -
Lan3g0613 850 SMART helicmild6 711 795 IPR001650 -
Lan3g0613 850 Gene3D - 299 498 IPR038718 -
Lan3g0613 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 497 IPR027417 -
Lan3g0613 850 Pfam HIRAN domain 25 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lan3g0613 850 Pfam Helicase conserved C-terminal domain 680 795 IPR001650 -
Lan3g0613 850 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 683 845 IPR001650 -
Lan3g0613 850 Pfam SNF2-related domain 195 567 IPR000330 GO:0005524|GO:0140658
Lan3g0613 850 Gene3D - 507 849 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0613 Lan-Chr3 7425909 7431413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0613 7 849 RAD5 or RAD16-like Gene Family AT5G05130 59.977 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan3g0613 SNF2_N 2.4e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0613 K15711 - jre:108979720 1100.89