Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0604 ATGCAGCATCAGCAACAACAAATGAGAATGGAGAACTCTGAGTTGTTACAATTACTAGCAGGCACCAATACCTCATTTTTCCACTCAGCAACAACCACTATGCATCAAAGCTTGTGTAGCAGTTCCTCTAATAGTTATAGTTACCCTTTGGAGTTGTCAGAAATTACTGATGCACTCTCCAATGAGAAAGATAGAGCACTTGCTGCTATGAAGAATCATAAGGAGGCCGAGAAGAGAAGAAGGGAGAGAATCAATACTCACCTTAATCAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACAGACAAGGCTTCACTTCTTGCAAAGGTTGTCCAGCGAGTGAAAGAGCTGAAGCAACAAACATCTAACATCAATATTGAACTCGAAACCCTTCCATCAGAGTCTGACGAGATCACCATAATCTCTAGCGCTGATGGTGACTATGGTGATCTCGTCGGTGATGGAAGGCTAATATTCAAGGCCACTTTATGCTGTGAGGATCGCTCCGACCTCATCACTGACATCATTGAAATCCTCAACTCTCTTCATCTGAAAACCCTCAAAGCAGAAATTGTCACACTTGGAGGAAGAACACGCAACATTCTTGTCATTGCTCCCGATAAAGATCACAGCATTGAATCAATCCATTTCCTTCAGAACTCCTTCAAGTCTCTGCTAGAACGCTCCAACTCTAGTGATAGATCCAAACGACGCCGTGGGTTGGACCGAAGACTCATGCCTTAA 744 0.4328 MQHQQQQMRMENSELLQLLAGTNTSFFHSATTTMHQSLCSSSSNSYSYPLELSEITDALSNEKDRALAAMKNHKEAEKRRRERINTHLNQLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSNINIELETLPSESDEITIISSADGDYGDLVGDGRLIFKATLCCEDRSDLITDIIEILNSLHLKTLKAEIVTLGGRTRNILVIAPDKDHSIESIHFLQNSFKSLLERSNSSDRSKRRRGLDRRLMP* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0604 247 Coils Coil 56 79 - -
Lan3g0604 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Lan3g0604 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 144 IPR036638 GO:0046983
Lan3g0604 247 PANTHER TRANSCRIPTION FACTOR BHLH30 14 245 IPR045847 GO:0003700|GO:0006355
Lan3g0604 247 CDD bHLH_AtAIG1_like 64 142 - -
Lan3g0604 247 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 14 245 - -
Lan3g0604 247 Gene3D - 62 127 IPR036638 GO:0046983
Lan3g0604 247 Coils Coil 107 127 - -
Lan3g0604 247 Pfam Helix-loop-helix DNA-binding domain 72 117 IPR011598 GO:0046983
Lan3g0604 247 SMART finulus 74 123 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0604 Lan-Chr3 7136397 7138508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0604 32 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 62.745 5.53e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g0604 HLH 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0604 - K22484 gmx:100802566 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0845 10 12464600 12466942 Lan3g0604 3 7136397 7138508 LSH