Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0601 ATGCCCTACCTTGTTCGAGAGAATCTCTTCATCGGCAACATCGGCGACGCGGCGGAGATTCTCCAAAACGGCAGCGTTTCAATCACTCACATTCTCTCCGTTCTCAGCTCCGCCTCCATCTCCTTCTTCTCCGAATGGCGTACCGGCCTCACCATCCCTACCAAGGAGATCAACAACCTCCACGTCGGAGCCGCCGCTGATGACGGCGCCAGAACCGCCTTGTTGCCGGAGAAGCTTCTATACTCGTTGGAGTATGCTGGTAACGATTTGAAGCTGGTTAGGATGGCGGTTCCGCTTAAGGATACTGAGAACGAAGATTTATTGGATTATTTGGAGGATTGCGTCGATTTCATTGATCGGAGTAGGAAGGAAGGTTCTGTTTTGGTCCACTGTTTTGCTGGAGTTTCTAGAAGTGCGGCAGTTATTACAGCATATTTGATGAGAACTGAACATCTATCTCAAGAAGATGCCCTTCAATCATTACGGAAAAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTTTAGAGCAGTTAAAAATGTTTGAGGAGATGGGCTTCAAGGTTGATTATTCCAGCCCTATATACAAGCGCTTTCGTCTGAAAATCCTAGGTGATCATTTCTGTGGGTCAGGAATAGACAGTTCTAAACTTGGTGCAGACCCCGGCATGCCTGTCCAAATTTCTTCAGATGTGGAAGAAGCTACCAAGGTAGAAAATAAGCGTAGACTAACATATCGATGTAAGAAGTGCCGTAGGGTGGTTGCATTGCAAGAAAATGTGGTAGAACATACTCCCGGTGAGGGTGAGACATCCTTTGAGTGGCACAAGCGGAGAAGTGGCAACCCTTTTGACAAGTCTAATGAATATGAGTGTTCATCCATATTTATTGAACCTCTAAGATGGATGAAAGCCGTCGAGGAAGGCGCGTTGGAGGGAAAGCTGTCCTGTGTTCATTGTGATGCACGTTTGGGATACTTCAATTGGACAGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCAGCTTTTCAACTCCACAAAGGTCGGGTAGATATAAGCCCTGTGTAA 1068 0.4682 MPYLVRENLFIGNIGDAAEILQNGSVSITHILSVLSSASISFFSEWRTGLTIPTKEINNLHVGAAADDGARTALLPEKLLYSLEYAGNDLKLVRMAVPLKDTENEDLLDYLEDCVDFIDRSRKEGSVLVHCFAGVSRSAAVITAYLMRTEHLSQEDALQSLRKSCEFVCPNDGFLEQLKMFEEMGFKVDYSSPIYKRFRLKILGDHFCGSGIDSSKLGADPGMPVQISSDVEEATKVENKRRLTYRCKKCRRVVALQENVVEHTPGEGETSFEWHKRRSGNPFDKSNEYECSSIFIEPLRWMKAVEEGALEGKLSCVHCDARLGYFNWTGIQCSCGSWITPAFQLHKGRVDISPV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0601 355 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 105 163 IPR000387 GO:0016311|GO:0016791
Lan3g0601 355 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 187 IPR020422 GO:0006470|GO:0008138
Lan3g0601 355 CDD DSP_DUSP12 4 189 - -
Lan3g0601 355 ProSitePatterns Tyrosine specific protein phosphatases active site. 129 139 IPR016130 GO:0016311|GO:0016791
Lan3g0601 355 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 186 IPR029021 -
Lan3g0601 355 PIRSF DUSP12 3 47 IPR016278 GO:0006470|GO:0008138
Lan3g0601 355 PIRSF DUSP12 83 355 IPR016278 GO:0006470|GO:0008138
Lan3g0601 355 SMART dsp_5 1 184 IPR020422 GO:0006470|GO:0008138
Lan3g0601 355 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 351 - -
Lan3g0601 355 Pfam Dual specificity phosphatase, catalytic domain 92 183 IPR000340 GO:0008138|GO:0016311
Lan3g0601 355 Gene3D Protein tyrosine phosphatase superfamily 4 204 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0601 Lan-Chr3 7056415 7063553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0601 92 183 Protein tyrosine phosphatase (PTP) family AT3G06110 36.559 2.51e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0601 K14819 - gmx:100804683 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1681 6 27301899 27309449 Lan3g0601 3 7056415 7063553 LSH