Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0594 ATGGGTAGCAGAAGTAGAAAGATTGACGTTAACAACACTGAGGATACTAACATGCCAAGCTACACTCCTTCATTGCCTTCTTCTAATTCCATGGGCACTGAAGCAAACAATGTTCATCCTTCTCGAATTTCTGAATTTGGAGCCCTTGAGCAATCTCTTGGATTTCGTGTTGAGGATGCCATCAATCTTAGCAGAAATCAAGTGTTTAGTCAAATGAAATCGAATAGCCAAGCTCTAGGTGCTGATGTTCAATTTGGTGCTTTGAGTAAGTCATTTGCAACCTCGGATATTAACCTCTCTGCTGCAATTGCTGGGACTCAGACATTGCCATTACAAAGAGACTCACAATCAAATCTGGCTCTGACAGCTGTTGGACATCGTGAGAACTGGGGAGAGTCCAACATGGCAGATGCAAGCGCCGATACTTCAACGGATGATACAGATGATAAACATCAGAGGGCTGAAAGAGGTGAATCCAGTGATAGATCAAAAGATAAATCCGATCAAAAGACATTACGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAAAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACAGGAGAGCAGACTAATTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAATATGCACGATGGTTAGAAGAACATAATAAGCAAGCCAATGAGCTAAGGGCTGCAATAAACTCTCATGCTGGAGATATTGAACTTCGTACCATCGTCGACAATTTCATGACACAATTTGATGATATATTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCATCTGAACTCCTCAAACTTCTTGTAAGTCAACTGGAGCCTTTAACTGAGCAACAAGTGATGGGCATATACAATTTGCAGCAGTCATCTCAGCAAGCAGAAGATGCTTTGTCCCAAGGAATGGATGCATTGCAACAATCACTAGCCGAGACATTGGCTAACGGTTCACCCAGCCCTTCTGGCTCTTCAGGAAATGTGGCAAATTATATGGGGCAAATGGCTGTGGCCATGGGAAAGCTTGGTACTCTTGAGGGGTTCCTTCGTCAGGCTGATAATCTGCGGCAGCAAACATTACAACAAATGCTTAGGATATTAACAACCAGGCAATCAGCCCGAGCTCTCCTCGCAATAAGCGATTACTTCTCCCGACTTCGAGCCCTAAGTTCTCTATGGCTTGCCAGGCCAAGGGACTAA 1368 0.4459 MGSRSRKIDVNNTEDTNMPSYTPSLPSSNSMGTEANNVHPSRISEFGALEQSLGFRVEDAINLSRNQVFSQMKSNSQALGADVQFGALSKSFATSDINLSAAIAGTQTLPLQRDSQSNLALTAVGHRENWGESNMADASADTSTDDTDDKHQRAERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTNSMSGNGAMAFDVEYARWLEEHNKQANELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQVMGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGSSGNVANYMGQMAVAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRD* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0594 455 Coils Coil 246 266 - -
Lan3g0594 455 PANTHER TRANSCRIPTION FACTOR TGA9 58 455 - -
Lan3g0594 455 MobiDBLite consensus disorder prediction 12 38 - -
Lan3g0594 455 MobiDBLite consensus disorder prediction 130 172 - -
Lan3g0594 455 Pfam Basic region leucine zipper 166 212 IPR004827 GO:0003700|GO:0006355
Lan3g0594 455 SMART brlzneu 166 229 IPR004827 GO:0003700|GO:0006355
Lan3g0594 455 Coils Coil 189 216 - -
Lan3g0594 455 CDD bZIP_HBP1b-like 170 222 - -
Lan3g0594 455 MobiDBLite consensus disorder prediction 1 38 - -
Lan3g0594 455 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 173 188 IPR004827 GO:0003700|GO:0006355
Lan3g0594 455 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 168 212 IPR004827 GO:0003700|GO:0006355
Lan3g0594 455 MobiDBLite consensus disorder prediction 143 172 - -
Lan3g0594 455 Pfam Seed dormancy control 253 328 IPR025422 GO:0006351|GO:0043565
Lan3g0594 455 Gene3D - 169 221 - -
Lan3g0594 455 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 58 455 - -
Lan3g0594 455 ProSiteProfiles DOG1 domain profile. 235 452 IPR025422 GO:0006351|GO:0043565
Lan3g0594 455 SUPERFAMILY Leucine zipper domain 170 213 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0594 Lan-Chr3 6944331 6951165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0594 135 455 bZIP Transcription Factor Family AT3G12250 74.018 1.02e-169 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan3g0594 DOG1 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0594 K14431 - gmx:778136 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0858 10 12667661 12674457 Lan3g0594 3 6944331 6951165 LSH