Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0552 ATGGACTTAGATCAGTATTTTGAGGAGGCTATGCCCCAAAATTATTACTTCGAAGATAAATTATCGCCAGAGATGTGGGAATCTGCCGATGATACCATTGCGGATTCTGATAGAAATGGTGGCTTTGACTGCAACATCTGCCTGGAGAGCGTGCTAGATCCAGTGGTAACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCTATAGTTTCTCTTCTGAAAATGAAGAGAAGGAGAAGACAGAATGTCCGGTATGCAAATCAGAAATTTCCGAATCCTCACTTGTTCCACTATACGGCCGCGGCCAAACCACATCACATTCTACAAGCAAGACTCGTCAAGCAGGGATCATCATACCGCGAAGACCCCATGGCCCTTCATGGTTGGCTGGGTCTTCAAGATCATCTAATACCGCAACCGTTTCCCAACCGACTTCACAAGTTTACCATCGTCATCATGACCATCCGCAAGAGTTCAACTCCTTTCCAGGCAGCTACACCTCACCAATGTTCAACACAGGTGCCCCACTCACAAACACATTTGATACAACATTTGGAGTTTTTGGTGAGATGATATATTCAAGGGTCTTCGGACACCAAGTGACAAACACATACACTGATTCATACAATCTCTCCCTAGAGAGTAATCCAAGGATCAGAAGGCAATTAGTGGAACTTGATAAGTCACTCAGTAGAATCTGTGTTTTCCTCCTTTGTTGCATGGTTTTATGCCTTCTCTTGTTCTGA 765 0.4405 MDLDQYFEEAMPQNYYFEDKLSPEMWESADDTIADSDRNGGFDCNICLESVLDPVVTLCGHLYCWPCIYKWLNFYSFSSENEEKEKTECPVCKSEISESSLVPLYGRGQTTSHSTSKTRQAGIIIPRRPHGPSWLAGSSRSSNTATVSQPTSQVYHRHHDHPQEFNSFPGSYTSPMFNTGAPLTNTFDTTFGVFGEMIYSRVFGHQVTNTYTDSYNLSLESNPRIRRQLVELDKSLSRICVFLLCCMVLCLLLF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0552 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 254 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan3g0552 254 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Lan3g0552 254 MobiDBLite consensus disorder prediction 135 153 - -
Lan3g0552 254 SUPERFAMILY RING/U-box 43 99 - -
Lan3g0552 254 SMART ring_2 44 92 IPR001841 -
Lan3g0552 254 MobiDBLite consensus disorder prediction 107 121 - -
Lan3g0552 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 121 IPR013083 -
Lan3g0552 254 MobiDBLite consensus disorder prediction 134 153 - -
Lan3g0552 254 MobiDBLite consensus disorder prediction 107 129 - -
Lan3g0552 254 Pfam Zinc finger, C3HC4 type (RING finger) 44 92 IPR018957 GO:0046872
Lan3g0552 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 254 - -
Lan3g0552 254 ProSiteProfiles Zinc finger RING-type profile. 44 93 IPR001841 -
Lan3g0552 254 CDD RING-HC_AtRMA_like 42 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0552 Lan-Chr3 5864561 5867384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0552 24 254 C3H Transcription Factor Family AT4G28270 38.912 5.10e-44 145